Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   STHERMO_RS04835 Genome accession   NZ_LR822006
Coordinates   922362..923432 (-) Length   356 a.a.
NCBI ID   WP_011227204.1    Uniprot ID   Q5LZT9
Organism   Streptococcus thermophilus isolate STH_CIRM_16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 917362..928432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STHERMO_RS04820 (STHERMO_1057) pstB 918087..918845 (+) 759 WP_011225971.1 phosphate ABC transporter ATP-binding protein PstB -
  STHERMO_RS04825 (STHERMO_1058) phoU 918873..919526 (+) 654 WP_041827032.1 phosphate signaling complex protein PhoU -
  STHERMO_RS04830 (STHERMO_1059) - 919660..922200 (+) 2541 WP_179970477.1 M1 family metallopeptidase -
  STHERMO_RS04835 (STHERMO_1060) xerS 922362..923432 (-) 1071 WP_011227204.1 tyrosine recombinase XerS Machinery gene
  STHERMO_RS04840 (STHERMO_1062) - 923657..924646 (-) 990 WP_002950753.1 lipoate--protein ligase -
  STHERMO_RS04845 (STHERMO_1063) - 924829..925383 (+) 555 WP_011227205.1 hypothetical protein -
  STHERMO_RS04850 (STHERMO_1064) - 925446..925880 (+) 435 WP_156703473.1 hypothetical protein -
  STHERMO_RS04855 glgP 925986..928249 (-) 2264 Protein_898 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41544.66 Da        Isoelectric Point: 9.7410

>NTDB_id=1008835 STHERMO_RS04835 WP_011227204.1 922362..923432(-) (xerS) [Streptococcus thermophilus isolate STH_CIRM_16]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKRMVIDVTRKGGQRDS
VNMASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1008835 STHERMO_RS04835 WP_011227204.1 922362..923432(-) (xerS) [Streptococcus thermophilus isolate STH_CIRM_16]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACCATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTACTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATTAATTTAAAAAGGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTTAATATGGCGAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5LZT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.303

100

0.823