Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABNP43_RS10155 Genome accession   NZ_CP157878
Coordinates   2004052..2004687 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain SCu11     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1999052..2009687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP43_RS10115 (ABNP43_10105) - 1999214..2000332 (+) 1119 WP_024718533.1 NADH-dependent flavin oxidoreductase -
  ABNP43_RS10120 (ABNP43_10110) - 2000384..2000890 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  ABNP43_RS10125 (ABNP43_10115) - 2001059..2001478 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  ABNP43_RS10130 (ABNP43_10120) - 2001500..2001952 (-) 453 WP_007500868.1 YppG family protein -
  ABNP43_RS10135 (ABNP43_10125) - 2002061..2002432 (-) 372 WP_017359730.1 YppE family protein -
  ABNP43_RS10140 (ABNP43_10130) - 2002491..2002724 (-) 234 WP_349924754.1 DUF5446 family protein -
  ABNP43_RS10145 (ABNP43_10135) sspM 2002921..2003025 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  ABNP43_RS10150 (ABNP43_10140) - 2003049..2004005 (-) 957 WP_007500870.1 DUF2515 domain-containing protein -
  ABNP43_RS10155 (ABNP43_10145) recU 2004052..2004687 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  ABNP43_RS10160 (ABNP43_10150) - 2004707..2007397 (+) 2691 WP_349924755.1 PBP1A family penicillin-binding protein -
  ABNP43_RS10165 (ABNP43_10155) - 2007433..2007942 (-) 510 WP_007500874.1 YpoC family protein -
  ABNP43_RS10170 (ABNP43_10160) nth 2007939..2008601 (-) 663 WP_349924756.1 endonuclease III -
  ABNP43_RS10175 (ABNP43_10165) - 2008619..2009323 (-) 705 WP_008344601.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=1008821 ABNP43_RS10155 WP_017359733.1 2004052..2004687(+) (recU) [Bacillus altitudinis strain SCu11]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1008821 ABNP43_RS10155 WP_017359733.1 2004052..2004687(+) (recU) [Bacillus altitudinis strain SCu11]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAC
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATATAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGAAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment