Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ABNP43_RS08770 Genome accession   NZ_CP157878
Coordinates   1733141..1733521 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCu11     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1728141..1738521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP43_RS08760 (ABNP43_08755) - 1729864..1730772 (+) 909 WP_008343827.1 trypsin-like serine protease -
  ABNP43_RS08765 (ABNP43_08760) - 1730919..1732913 (+) 1995 WP_349926012.1 glycosyltransferase family 39 protein -
  ABNP43_RS08770 (ABNP43_08765) nucA/comI 1733141..1733521 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ABNP43_RS08775 (ABNP43_08770) - 1733665..1734513 (+) 849 WP_008343823.1 STAS domain-containing protein -
  ABNP43_RS08780 (ABNP43_08775) - 1734548..1735090 (-) 543 WP_335357649.1 IseA DL-endopeptidase inhibitor family protein -
  ABNP43_RS08785 (ABNP43_08780) - 1735387..1735830 (+) 444 WP_098680461.1 hypothetical protein -
  ABNP43_RS08790 (ABNP43_08785) lexA 1735878..1736498 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  ABNP43_RS08795 (ABNP43_08790) yneA 1736658..1736969 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  ABNP43_RS08800 (ABNP43_08795) - 1736987..1737634 (+) 648 WP_138825815.1 recombinase family protein -
  ABNP43_RS08805 (ABNP43_08800) - 1737704..1737934 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=1008820 ABNP43_RS08770 WP_224559893.1 1733141..1733521(+) (nucA/comI) [Bacillus altitudinis strain SCu11]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1008820 ABNP43_RS08770 WP_224559893.1 1733141..1733521(+) (nucA/comI) [Bacillus altitudinis strain SCu11]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGACACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGCTCATG
GGTCGGGCATCAAATCAGTGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment