Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ABNP43_RS06980 Genome accession   NZ_CP157878
Coordinates   1369123..1369704 (+) Length   193 a.a.
NCBI ID   WP_007498648.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCu11     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1364123..1374704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP43_RS06955 (ABNP43_06950) - 1364788..1365966 (+) 1179 WP_046527697.1 N-acetyldiaminopimelate deacetylase -
  ABNP43_RS06960 (ABNP43_06955) - 1366017..1366259 (+) 243 WP_003211408.1 YkuS family protein -
  ABNP43_RS06965 (ABNP43_06960) - 1366284..1367093 (-) 810 WP_349925826.1 mechanosensitive ion channel family protein -
  ABNP43_RS06970 (ABNP43_06965) ahpA 1367365..1367907 (+) 543 WP_007498654.1 biofilm-specific peroxidase AhpA -
  ABNP43_RS06975 (ABNP43_06970) - 1368183..1368641 (+) 459 WP_008345174.1 TlpA disulfide reductase family protein -
  ABNP43_RS06980 (ABNP43_06975) rok 1369123..1369704 (+) 582 WP_007498648.1 hypothetical protein Regulator
  ABNP43_RS06985 (ABNP43_06980) - 1369767..1370684 (-) 918 WP_349925829.1 sigmaE regulated sporulation protein -
  ABNP43_RS06990 (ABNP43_06985) - 1370768..1371349 (+) 582 WP_017359414.1 molybdenum cofactor guanylyltransferase -
  ABNP43_RS06995 (ABNP43_06990) - 1371379..1372395 (+) 1017 WP_041092414.1 MoeB/ThiF family adenylyltransferase -
  ABNP43_RS07000 (ABNP43_06995) glp 1372405..1373679 (+) 1275 WP_052320856.1 gephyrin-like molybdotransferase Glp -
  ABNP43_RS07005 (ABNP43_07000) mobB 1373661..1374188 (+) 528 WP_349925832.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  ABNP43_RS07010 (ABNP43_07005) - 1374181..1374672 (+) 492 WP_008345161.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21861.83 Da        Isoelectric Point: 9.7309

>NTDB_id=1008814 ABNP43_RS06980 WP_007498648.1 1369123..1369704(+) (rok) [Bacillus altitudinis strain SCu11]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVTDTKKEVRTERKTDSLPVLAELAAQEMRSYNQ
PAQTQSNVTSSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=1008814 ABNP43_RS06980 WP_007498648.1 1369123..1369704(+) (rok) [Bacillus altitudinis strain SCu11]
TTGTTTAATGAGAGGGAAGCGTTACGTTTACGATTGGAACAATTAAATGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAACGAGATGCGATTTACGCAAAACTAAGAGAATTAGACCGTCAAGGTACAGGTCTCGTCACAGATACAAAAAAAG
AAGTACGTACAGAGAGAAAAACAGATTCACTGCCTGTATTAGCTGAGCTGGCTGCACAAGAAATGAGAAGCTACAATCAG
CCTGCGCAAACGCAGTCAAACGTTACATCATCTTTAGGAACAGGTCAGCTAAATGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCTAGACCTGGATCAAAGGCAGCTAAGCTTCGTGAAGCTGCAATCAAAACATTAA
AGCGTCATAATGCGGCGATTAAAAGCTCTGAACTTCAAAAAGAGATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTACCCAGAAGTGAAGAAACCTTATCGCGGACAGTATATTTTAGAAGGCGA
CATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

79.474

98.446

0.782

Multiple sequence alignment