Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ABNP43_RS06850 Genome accession   NZ_CP157878
Coordinates   1348625..1349086 (-) Length   153 a.a.
NCBI ID   WP_007498684.1    Uniprot ID   A0A9X0FXQ0
Organism   Bacillus altitudinis strain SCu11     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1343625..1354086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP43_RS06825 (ABNP43_06820) - 1344231..1345115 (+) 885 WP_349925811.1 cation diffusion facilitator family transporter -
  ABNP43_RS06830 (ABNP43_06825) - 1345180..1345332 (-) 153 WP_008348040.1 hypothetical protein -
  ABNP43_RS06835 (ABNP43_06830) - 1345633..1346172 (+) 540 WP_035700564.1 RDD family protein -
  ABNP43_RS06840 (ABNP43_06835) - 1346298..1347608 (+) 1311 WP_349925814.1 MFS transporter -
  ABNP43_RS06845 (ABNP43_06840) - 1347682..1348590 (+) 909 WP_008348035.1 chemotaxis protein -
  ABNP43_RS06850 (ABNP43_06845) kre 1348625..1349086 (-) 462 WP_007498684.1 YkyB family protein Regulator
  ABNP43_RS06855 (ABNP43_06850) - 1349306..1350202 (-) 897 WP_236810420.1 AraC family transcriptional regulator -
  ABNP43_RS06860 (ABNP43_06855) - 1350316..1351260 (+) 945 WP_191218877.1 EamA family transporter -
  ABNP43_RS06865 (ABNP43_06860) - 1351417..1351632 (-) 216 WP_008348016.1 hypothetical protein -
  ABNP43_RS06870 (ABNP43_06865) - 1351800..1351976 (+) 177 WP_164071367.1 hypothetical protein -
  ABNP43_RS06875 (ABNP43_06870) - 1352199..1353476 (-) 1278 WP_349925818.1 MFS transporter -
  ABNP43_RS06880 (ABNP43_06875) - 1353550..1354047 (-) 498 WP_019743906.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17739.31 Da        Isoelectric Point: 10.2617

>NTDB_id=1008813 ABNP43_RS06850 WP_007498684.1 1348625..1349086(-) (kre) [Bacillus altitudinis strain SCu11]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPRYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1008813 ABNP43_RS06850 WP_007498684.1 1348625..1349086(-) (kre) [Bacillus altitudinis strain SCu11]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAGATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCAAAAGCGAATATGTCATTAAATCGAGCGAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCCGTCTTCAAACGGCTCGGAGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771

Multiple sequence alignment