Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ABNP43_RS02000 Genome accession   NZ_CP157878
Coordinates   379176..379604 (-) Length   142 a.a.
NCBI ID   WP_349925306.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCu11     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 374176..384604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP43_RS01970 (ABNP43_01965) - 374319..374648 (+) 330 WP_007498247.1 YckD family protein -
  ABNP43_RS01975 (ABNP43_01970) - 374695..375459 (-) 765 WP_349925305.1 MBL fold metallo-hydrolase -
  ABNP43_RS01980 (ABNP43_01975) - 375576..375995 (+) 420 WP_026050043.1 Lrp/AsnC family transcriptional regulator -
  ABNP43_RS01985 (ABNP43_01980) - 376020..376826 (+) 807 WP_017366589.1 AAC(3) family N-acetyltransferase -
  ABNP43_RS01990 (ABNP43_01985) comJ 376828..377214 (-) 387 WP_008347843.1 competence protein ComJ -
  ABNP43_RS01995 (ABNP43_01990) - 377351..379048 (-) 1698 WP_046527171.1 methyl-accepting chemotaxis protein -
  ABNP43_RS02000 (ABNP43_01995) nucA/comI 379176..379604 (-) 429 WP_349925306.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ABNP43_RS02005 (ABNP43_02000) - 379971..382040 (+) 2070 WP_349925307.1 hydantoinase/oxoprolinase family protein -
  ABNP43_RS02010 (ABNP43_02005) - 382030..384015 (+) 1986 WP_349925308.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15942.90 Da        Isoelectric Point: 6.4880

>NTDB_id=1008794 ABNP43_RS02000 WP_349925306.1 379176..379604(-) (nucA/comI) [Bacillus altitudinis strain SCu11]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQYIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1008794 ABNP43_RS02000 WP_349925306.1 379176..379604(-) (nucA/comI) [Bacillus altitudinis strain SCu11]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATATATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.29

75.352

0.507

Multiple sequence alignment