Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ABNP43_RS00020 Genome accession   NZ_CP157878
Coordinates   3153..4265 (+) Length   370 a.a.
NCBI ID   WP_007497487.1    Uniprot ID   A0A9X0KBN2
Organism   Bacillus altitudinis strain SCu11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP43_RS00005 (ABNP43_00005) dnaA 97..1437 (+) 1341 WP_250027104.1 chromosomal replication initiator protein DnaA -
  ABNP43_RS00010 (ABNP43_00010) dnaN 1634..2770 (+) 1137 WP_008347596.1 DNA polymerase III subunit beta -
  ABNP43_RS00015 (ABNP43_00015) yaaA 2921..3136 (+) 216 WP_331832999.1 S4 domain-containing protein YaaA -
  ABNP43_RS00020 (ABNP43_00020) recF 3153..4265 (+) 1113 WP_007497487.1 DNA replication/repair protein RecF Machinery gene
  ABNP43_RS00025 (ABNP43_00025) - 4283..4528 (+) 246 WP_008360920.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  ABNP43_RS00030 (ABNP43_00030) gyrB 4586..6502 (+) 1917 WP_024718422.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ABNP43_RS00035 (ABNP43_00035) gyrA 6736..9240 (+) 2505 WP_046526899.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42574.65 Da        Isoelectric Point: 7.1297

>NTDB_id=1008789 ABNP43_RS00020 WP_007497487.1 3153..4265(+) (recF) [Bacillus altitudinis strain SCu11]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1008789 ABNP43_RS00020 WP_007497487.1 3153..4265(+) (recF) [Bacillus altitudinis strain SCu11]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAGCCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTTGTCACCACTACGAGTGT
TGAAGGCATCGACCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.198

99.73

0.83

Multiple sequence alignment