Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABNP46_RS02055 Genome accession   NZ_CP157875
Coordinates   424839..426278 (+) Length   479 a.a.
NCBI ID   WP_349920772.1    Uniprot ID   -
Organism   Aeromonas veronii strain Ichip_C_3-7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419839..431278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP46_RS02025 (ABNP46_02020) mlaF 420419..421219 (-) 801 WP_349920768.1 phospholipid ABC transporter ATP-binding protein MlaF -
  ABNP46_RS02030 (ABNP46_02025) - 421426..422421 (+) 996 WP_349920769.1 KpsF/GutQ family sugar-phosphate isomerase -
  ABNP46_RS02035 (ABNP46_02030) kdsC 422421..422975 (+) 555 WP_349920770.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  ABNP46_RS02040 (ABNP46_02035) lptC 422972..423529 (+) 558 WP_349920771.1 LPS export ABC transporter periplasmic protein LptC -
  ABNP46_RS02045 (ABNP46_02040) lptA 423516..424034 (+) 519 WP_349922338.1 lipopolysaccharide transport periplasmic protein LptA -
  ABNP46_RS02050 (ABNP46_02045) lptB 424047..424772 (+) 726 WP_033132290.1 LPS export ABC transporter ATP-binding protein -
  ABNP46_RS02055 (ABNP46_02050) rpoN/rpoN1 424839..426278 (+) 1440 WP_349920772.1 RNA polymerase factor sigma-54 Machinery gene
  ABNP46_RS02060 (ABNP46_02055) hpf 426299..426586 (+) 288 WP_042001473.1 ribosome hibernation promoting factor -
  ABNP46_RS02065 (ABNP46_02060) ptsN 426589..427035 (+) 447 WP_349920773.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ABNP46_RS02070 (ABNP46_02065) rapZ 427076..427942 (+) 867 WP_349920774.1 RNase adapter RapZ -
  ABNP46_RS02075 (ABNP46_02070) npr 427963..428235 (+) 273 WP_349920775.1 PTS phosphocarrier protein NPr -
  ABNP46_RS02080 (ABNP46_02075) - 428247..430151 (-) 1905 WP_349920776.1 PRD domain-containing protein -
  ABNP46_RS02085 (ABNP46_02080) - 430254..430991 (-) 738 WP_349920777.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53643.56 Da        Isoelectric Point: 4.3903

>NTDB_id=1008745 ABNP46_RS02055 WP_349920772.1 424839..426278(+) (rpoN/rpoN1) [Aeromonas veronii strain Ichip_C_3-7]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEESEAQETSPVEVADASQLDSSDAMAQDKMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEESVYQGETTENLQDYLLWQMRLTPFSDLDAAIALAIIDAIDESGYLTVSLED
IQAAVSSDEVEVELDEVEAVLKRVQHFDPLGIAARSVQECLLIQLGQYPSDLPWLNEAREVISEHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=1008745 ABNP46_RS02055 WP_349920772.1 424839..426278(+) (rpoN/rpoN1) [Aeromonas veronii strain Ichip_C_3-7]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTTTCCACGCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAGCGAGG
CGCAGGAAACCAGTCCGGTCGAAGTGGCCGATGCCAGTCAGCTGGATTCCAGTGACGCCATGGCGCAGGACAAGATGCCG
GACGAGCTGCCCGTCGATACCACCTGGGACGAGGTCTACTCCGCCGGGACGGCCCAGAGCGCCGGCCCCATCCACGATGG
AGAGGAGAGCGTCTATCAGGGGGAAACCACCGAGAACCTGCAGGACTATCTGTTGTGGCAGATGCGGCTGACGCCGTTCA
GCGATCTGGATGCCGCCATCGCCCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACGGTTTCTCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGTGACGAGGTAGAAGTGGAACTGGATGAGGTCGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGCTCGGCATCGCCGCCCGCTCCGTGCAGGAGTGCCTGCTGATCCAGCTTGGCCAGTATCCCTCCGATCTGCCCT
GGCTCAACGAGGCACGGGAAGTGATCAGCGAGCACATGGATCTGCTTGGCAATCGTGACTATCGCACCCTGGCGCGCAAG
ACCCGGCTCAAGGAGAGCGACCTCAAGGAGGTGCTGGACCTTATCCAGCAGCTGGAACCCAGACCCGGCAACGGCGTCAT
CCAGAGCGAATCCCAATACGTGATCCCGGATGTGTCCGTGGTCAAGAAAGGCAGCAAGTGGGTGGTGGAGCTCAACCCGG
ATTCGGCGCCGCGCATTCGCGTCAACGAGACCTATGCGGCCATGGCCCGCAACGCGCGCAGCAGCACGGATACCCAGTTC
ATCCGCTCCCACCTGCAGGAGGCGAAGTGGTTCATCAAGAGTCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGGGAAGAAGCCATGAAACCCATGGTGCTCAATGACATCGCCG
AGGCGGTGGAGATGCATGAATCGACCATCTCGCGGGTGACGACCCAGAAGTACATGCATACGCCCCGTGGCATCTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTGAATACGGAAGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCTTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.078

100

0.491

Multiple sequence alignment