Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   ABNP33_RS15915 Genome accession   NZ_CP157872
Coordinates   3361114..3361914 (-) Length   266 a.a.
NCBI ID   WP_212823832.1    Uniprot ID   -
Organism   Acinetobacter pittii strain bac73     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3356114..3366914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP33_RS15895 (ABNP33_15890) - 3357179..3357877 (-) 699 WP_075383342.1 tetratricopeptide repeat protein -
  ABNP33_RS15900 (ABNP33_15895) hisS 3357906..3359198 (-) 1293 WP_262440107.1 histidine--tRNA ligase -
  ABNP33_RS15905 (ABNP33_15900) ispG 3359195..3360310 (-) 1116 WP_002115078.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  ABNP33_RS15910 (ABNP33_15905) - 3360332..3361123 (-) 792 WP_262440106.1 helix-turn-helix domain-containing protein -
  ABNP33_RS15915 (ABNP33_15910) pilF 3361114..3361914 (-) 801 WP_212823832.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  ABNP33_RS15920 (ABNP33_15915) rlmN 3361929..3363164 (-) 1236 WP_174726149.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  ABNP33_RS15925 (ABNP33_15920) ndk 3363288..3363719 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  ABNP33_RS15930 (ABNP33_15925) iscX 3363833..3364033 (-) 201 WP_004698764.1 Fe-S cluster assembly protein IscX -
  ABNP33_RS15935 (ABNP33_15930) - 3364133..3364684 (-) 552 WP_005066176.1 phosphatase PAP2 family protein -
  ABNP33_RS15940 (ABNP33_15935) - 3364709..3365995 (-) 1287 WP_174726172.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30056.30 Da        Isoelectric Point: 9.0417

>NTDB_id=1008703 ABNP33_RS15915 WP_212823832.1 3361114..3361914(-) (pilF) [Acinetobacter pittii strain bac73]
MSIPKLKTVLCMGIAVAFLAGGCQTTHTQKKDPEKAVKVRTQLAAEHIRSGDLDSAKRALDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQAHNNYGTYLYQMERYNDAVEQFRIAGATLGYDQRYQALENLGRIYLKLGDV
ANAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGVRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1008703 ABNP33_RS15915 WP_212823832.1 3361114..3361914(-) (pilF) [Acinetobacter pittii strain bac73]
TTGAGTATTCCAAAGTTAAAAACGGTCTTATGTATGGGGATTGCAGTTGCATTTCTGGCAGGTGGTTGCCAGACAACGCA
TACGCAAAAAAAAGACCCAGAGAAAGCGGTAAAGGTGCGTACACAACTTGCTGCTGAACATATCCGTTCGGGTGACTTGG
ACTCAGCAAAACGAGCTCTTGATCAAGCTTTAAGTGTAGATAGCCGCGATGCTACTGCAAATATGATGATGGGTATTTTG
CTACAGCAAGAAGGTAGCAAACCCAATTTAGAAAAAGCAGAACATTATTTTAAACGAGCAATTTCATCTGAACCAGATAA
TGCTCAAGCACATAATAATTATGGTACTTATTTATATCAAATGGAGCGTTATAATGATGCGGTTGAGCAATTTCGTATTG
CTGGCGCAACATTAGGTTATGACCAGCGCTATCAGGCATTAGAAAATCTGGGGCGTATTTATTTAAAATTGGGTGATGTT
GCGAATGCTGAAAAAACATTCAAACAAGCACTCCTTGCTAACCGCGACTCTTATATTTCAATGTTAGAGTTAGCGGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAGCAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCAAGAGCACTTTGGATTGGTGTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTGTTAGTAAACCAG
TTACGTGCTTTGTTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)

Tetratricopeptide repeat (TPR_8)

(39-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

93.985

100

0.94
  pilF Acinetobacter baylyi ADP1

75.769

97.744

0.741

Multiple sequence alignment