Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   ABNP33_RS10020 Genome accession   NZ_CP157872
Coordinates   2136330..2136710 (-) Length   126 a.a.
NCBI ID   WP_017482272.1    Uniprot ID   A0A9X3QIG5
Organism   Acinetobacter pittii strain bac73     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2131330..2141710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP33_RS09990 (ABNP33_09985) tadA 2131334..2131837 (-) 504 WP_174724493.1 tRNA adenosine(34) deaminase TadA -
  ABNP33_RS09995 (ABNP33_09990) hibch 2131843..2132967 (-) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  ABNP33_RS10000 (ABNP33_09995) ung 2132964..2133677 (-) 714 WP_005069527.1 uracil-DNA glycosylase -
  ABNP33_RS10005 (ABNP33_10000) - 2133731..2134327 (-) 597 WP_017386831.1 6-carboxytetrahydropterin synthase -
  ABNP33_RS10010 (ABNP33_10005) gspK 2134555..2135514 (-) 960 WP_262439607.1 type II secretion system minor pseudopilin GspK -
  ABNP33_RS10015 (ABNP33_10010) xcpW 2135515..2136330 (-) 816 WP_262439608.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABNP33_RS10020 (ABNP33_10015) xcpV 2136330..2136710 (-) 381 WP_017482272.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABNP33_RS10025 (ABNP33_10020) - 2136700..2137254 (-) 555 WP_086398947.1 type II secretion system protein -
  ABNP33_RS10030 (ABNP33_10025) - 2137261..2137869 (-) 609 WP_057085321.1 TetR/AcrR family transcriptional regulator -
  ABNP33_RS10035 (ABNP33_10030) ycfH 2137906..2138679 (-) 774 WP_086398946.1 TatD family hydrolase -
  ABNP33_RS10040 (ABNP33_10035) pilZ 2138697..2139038 (-) 342 WP_064784079.1 PilZ domain-containing protein -
  ABNP33_RS10045 (ABNP33_10040) holB 2139049..2140029 (-) 981 WP_199984343.1 DNA polymerase III subunit delta' -
  ABNP33_RS10050 (ABNP33_10045) kdsB 2140043..2140804 (-) 762 WP_068527573.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=1008695 ABNP33_RS10020 WP_017482272.1 2136330..2136710(-) (xcpV) [Acinetobacter pittii strain bac73]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQITSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1008695 ABNP33_RS10020 WP_017482272.1 2136330..2136710(-) (xcpV) [Acinetobacter pittii strain bac73]
ATGAAATCTAAAGGTTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAATTACTTCTCAAGGCGAAACTTGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCAGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937

Multiple sequence alignment