Detailed information NTG1008666

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H1C95_RS06375
• Genome accession: NZ_LR778153
• Coordinates: 1332548..1333540 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate SC480
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1327548..1338540

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1C95_RS06345	ispD	1327608..1328319 (+)	712	Protein_1243	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H1C95_RS06350	ispF	1328319..1328798 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H1C95_RS06355	truD	1328795..1329844 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
H1C95_RS06360	surE	1329825..1330586 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H1C95_RS06365	pcm	1330580..1331206 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H1C95_RS06370	nlpD	1331391..1332485 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
H1C95_RS06375	rpoS	1332548..1333540 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H1C95_RS06380	-	1333661..1334068 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
H1C95_RS06385	-	1334215..1334808 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
H1C95_RS06390	-	1334808..1336235 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
H1C95_RS06395	-	1336246..1336482 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
H1C95_RS06400	ygbN	1336521..1337885 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1008666 H1C95_RS06375 WP_000081550.1 1332548..1333540(+) (rpoS) [Escherichia coli isolate SC480]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1008666 H1C95_RS06375 WP_000081550.1 1332548..1333540(+) (rpoS) [Escherichia coli isolate SC480]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715