Detailed information NTG1008629

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H1D09_RS21885
• Genome accession: NZ_LR778152
• Coordinates: 4528159..4529151 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate SC477
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4523159..4534151

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1D09_RS21855	ispD	4523220..4523930 (+)	711	WP_175058725.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H1D09_RS21860	ispF	4523930..4524409 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H1D09_RS21865	truD	4524406..4525455 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
H1D09_RS21870	surE	4525436..4526197 (+)	762	WP_001374596.1	5'/3'-nucleotidase SurE	-
H1D09_RS21875	pcm	4526191..4526817 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H1D09_RS21880	nlpD	4527002..4528096 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H1D09_RS21885	rpoS	4528159..4529151 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H1D09_RS21890	-	4529326..4529877 (-)	552	WP_001179442.1	flavodoxin family protein	-
H1D09_RS21895	-	4530103..4531146 (+)	1044	WP_180344723.1	MBL fold metallo-hydrolase	-
H1D09_RS21900	ygbN	4531289..4532653 (-)	1365	WP_000104433.1	GntP family transporter	-
H1D09_RS21905	ygbM	4532742..4533518 (-)	777	WP_001357575.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1008629 H1D09_RS21885 WP_000081550.1 4528159..4529151(+) (rpoS) [Escherichia coli isolate SC477]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1008629 H1D09_RS21885 WP_000081550.1 4528159..4529151(+) (rpoS) [Escherichia coli isolate SC477]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715