Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABNP42_RS16985 Genome accession   NZ_CP157868
Coordinates   3290361..3292079 (-) Length   572 a.a.
NCBI ID   WP_131888282.1    Uniprot ID   -
Organism   Priestia flexa strain Antcr29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3285361..3297079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP42_RS16965 (ABNP42_16935) - 3285631..3287202 (+) 1572 WP_131888280.1 L-lactate permease -
  ABNP42_RS16970 (ABNP42_16940) - 3287232..3287480 (-) 249 WP_286175478.1 DUF2798 domain-containing protein -
  ABNP42_RS16975 (ABNP42_16945) spo0A 3287871..3288671 (-) 801 WP_350019611.1 sporulation transcription factor Spo0A -
  ABNP42_RS16980 (ABNP42_16950) spoIVB 3288897..3290174 (-) 1278 WP_094910756.1 SpoIVB peptidase -
  ABNP42_RS16985 (ABNP42_16955) recN 3290361..3292079 (-) 1719 WP_131888282.1 DNA repair protein RecN Machinery gene
  ABNP42_RS16990 (ABNP42_16960) argR 3292096..3292545 (-) 450 WP_025911491.1 transcriptional regulator ArgR -
  ABNP42_RS16995 (ABNP42_16965) - 3292732..3293562 (-) 831 WP_131888283.1 TlyA family RNA methyltransferase -
  ABNP42_RS17000 (ABNP42_16970) dxs 3293559..3295457 (-) 1899 WP_094910759.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ABNP42_RS17005 (ABNP42_16975) - 3295774..3296667 (-) 894 WP_131888285.1 polyprenyl synthetase family protein -
  ABNP42_RS17010 (ABNP42_16980) - 3296670..3296903 (-) 234 WP_094910761.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 64321.83 Da        Isoelectric Point: 4.6179

>NTDB_id=1008582 ABNP42_RS16985 WP_131888282.1 3290361..3292079(-) (recN) [Priestia flexa strain Antcr29]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAIHLLVGGRGSSEFVRHGTNRAEIEGLFLIEDEHPCYEKA
KQVGVEVEDGMVVLRRDITMNGKSICRINGKLVTLGILREVGQTLMDIHGQHEHQDLMNQDRHLILLDQYGGQKVEEALS
EYREVFTTYTTLKKQLEQLTENEQQMAHRLDLIQFQLDEIKAADLQPNEDELLMDERLKISNFEKIYTSLTDAYNALHGE
QRGLDWLGVAMNHAEEISNLEDTYGEISEVISSSFYQIEDASYRIRQQLDLLEYDPKRLNFIESRLNEISHLKRKYGQSV
DEILEYAAQIEDEIDRIENRDTHVEKIKQKLSSIAEDLLVEAKNVSEVRKQLAAELTDSIHQELQELYMAKTIFNIVFEK
LPSNQADSELSGDSVKFTKDGIDSVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSG
RVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFISKQIKDDRTTTSVLPLSEEEKTKEIARMIAGAEITDLTQQHA
QELLGLAAKIKQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=1008582 ABNP42_RS16985 WP_131888282.1 3290361..3292079(-) (recN) [Priestia flexa strain Antcr29]
TTGTTAGCAGAACTATCAATCAAAAACTTTGCCATCATTGATGAGCTTTCAGTATCGTTTGAAAAAGGCTTAACAGTTTT
AACAGGTGAAACAGGAGCTGGTAAGTCAATTATTATTGATGCTATTCATTTGCTTGTTGGAGGGCGTGGTTCATCTGAGT
TTGTAAGGCATGGAACAAATCGAGCGGAAATTGAAGGGTTATTTTTAATTGAAGACGAGCACCCTTGCTATGAAAAAGCC
AAGCAGGTGGGAGTTGAAGTTGAAGATGGAATGGTGGTGCTAAGACGAGACATCACTATGAACGGTAAGAGTATTTGCCG
TATCAATGGAAAGCTAGTCACGCTTGGCATTTTACGTGAAGTGGGTCAAACACTGATGGATATCCATGGACAGCATGAAC
ATCAGGACTTGATGAACCAAGATCGACACCTAATTCTTCTTGATCAGTATGGGGGGCAAAAGGTTGAAGAAGCACTATCA
GAATATCGAGAAGTGTTTACTACATATACGACGCTAAAGAAACAGTTAGAACAATTGACAGAAAATGAACAGCAAATGGC
TCATCGCTTAGACTTAATTCAATTTCAGCTTGATGAAATCAAAGCAGCTGATCTTCAACCAAATGAAGATGAGTTGCTGA
TGGATGAGCGCCTTAAGATTTCTAACTTTGAGAAGATTTATACGTCCTTAACAGATGCGTATAATGCGCTTCATGGTGAG
CAAAGAGGGTTAGATTGGCTGGGTGTAGCTATGAATCATGCCGAAGAAATTTCAAACTTAGAAGATACCTATGGTGAAAT
TTCAGAAGTTATATCATCAAGTTTTTATCAAATTGAAGATGCTTCTTATCGTATTCGTCAGCAGCTTGATTTATTAGAGT
ATGACCCAAAGCGCCTTAATTTTATTGAATCACGGCTAAATGAAATTAGTCATTTAAAGCGTAAGTATGGTCAAAGCGTT
GATGAAATTCTGGAGTATGCAGCTCAAATTGAAGATGAAATTGATCGAATTGAAAATCGAGATACTCACGTTGAGAAAAT
TAAACAAAAGCTGTCGAGCATAGCGGAAGATTTGCTTGTTGAAGCGAAAAATGTTTCTGAGGTTAGAAAGCAGCTAGCAG
CAGAATTAACGGATAGTATTCATCAAGAGCTACAGGAGCTTTATATGGCTAAAACTATTTTTAATATCGTATTTGAAAAG
CTACCATCAAATCAAGCTGATAGCGAACTTAGCGGTGATTCTGTTAAGTTTACTAAGGATGGTATCGATTCAGTGGAGTT
TTACATTTCTACAAACCCAGGTGAGCCGTTAAAGCCTCTTGCTAAAGTAGCGTCTGGTGGAGAACTATCTCGTATTATGC
TTGCACTAAAGAGTATTTTCTCTAAGCATCAAGGCGTTACGTCCATTATTTTTGATGAAGTAGATACAGGGGTGAGCGGC
CGTGTCGCACAGTCCATTGGTGAGAAAATTCATGCCATTTCTGTAGATTCTCAAGTACTATGTATTTCTCATCTTCCACA
GGTGGCTGCTATGGCAGATACACATTTGTTTATTTCAAAGCAAATTAAAGATGATCGTACTACAACATCTGTTCTACCTT
TAAGTGAAGAAGAGAAAACAAAAGAAATTGCTCGCATGATTGCAGGAGCCGAAATAACTGATTTAACTCAGCAGCACGCC
CAAGAACTGTTGGGTTTAGCAGCGAAAATTAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.129

100

0.622

Multiple sequence alignment