Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABNP42_RS03960 Genome accession   NZ_CP157868
Coordinates   763969..765789 (+) Length   606 a.a.
NCBI ID   WP_094913045.1    Uniprot ID   -
Organism   Priestia flexa strain Antcr29     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 758969..770789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP42_RS03940 (ABNP42_03940) - 759253..759915 (-) 663 WP_094913049.1 TerC family protein -
  ABNP42_RS03945 (ABNP42_03945) mecA 760247..760930 (+) 684 WP_350019822.1 adaptor protein MecA -
  ABNP42_RS03950 (ABNP42_03950) cls 761011..762528 (+) 1518 WP_094913047.1 cardiolipin synthase -
  ABNP42_RS03955 (ABNP42_03955) - 762630..763817 (+) 1188 WP_094913046.1 competence protein CoiA family protein -
  ABNP42_RS03960 (ABNP42_03960) pepF 763969..765789 (+) 1821 WP_094913045.1 oligoendopeptidase F Regulator
  ABNP42_RS03965 (ABNP42_03965) - 766262..767146 (-) 885 WP_280924296.1 ClpXP adapter SpxH family protein -
  ABNP42_RS03970 (ABNP42_03970) - 767143..767553 (-) 411 WP_061785625.1 globin -
  ABNP42_RS03975 (ABNP42_03975) - 767772..768416 (-) 645 WP_350019823.1 lytic transglycosylase domain-containing protein -
  ABNP42_RS03980 (ABNP42_03980) - 768421..769011 (-) 591 WP_094913042.1 CYTH domain-containing protein -
  ABNP42_RS03985 (ABNP42_03985) - 769320..769706 (+) 387 WP_094913041.1 hypothetical protein -
  ABNP42_RS03990 (ABNP42_03990) - 769726..770367 (+) 642 WP_094913040.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69996.45 Da        Isoelectric Point: 4.6018

>NTDB_id=1008564 ABNP42_RS03960 WP_094913045.1 763969..765789(+) (pepF) [Priestia flexa strain Antcr29]
MSEQSTVKKLPNRSEIKIEDTWRLEDIFETDEAWEKEFQAVKALVPEMEQYRGKLGESADTLFKALQQQDELTMRVSKLY
TYAHMRYDQDTTNSFYQGLNDRIKTLYTEIASALSYVTPELLAVDEATLKQYLEESKDLQLYAHALDEVNRERPHILSES
EEAILAQASEALGASSNTFGMLNNADLEFPSIKDENGEEVEITHGRYIRFLESSDRRVREDAFKAVYDTYGKFKNTFAST
LSGTVKKDNFSAKVRNYESARHAALSANNIPEEVYDNLVATVNEYLPLLQRYIDLRKKVLGVDELHMYDLYTPLVQDVKM
EIPYSEAKDYLLKGLAPLGEEYISILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKEQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHEIHVRAQ
NGEPLTPELLTKLYYDLNKKYFGDNLVIDEEIGLEWARIPHFYYNYYVYQYATGFSAAAALSKQILEEGDAAVERYLGFL
KAGSSDYPIEVLKRAGVDMTTAEPIKEALEVFKEKLEEMERLLENN

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=1008564 ABNP42_RS03960 WP_094913045.1 763969..765789(+) (pepF) [Priestia flexa strain Antcr29]
ATGAGTGAACAATCCACAGTGAAAAAGTTGCCAAACCGCAGTGAAATTAAAATAGAAGATACATGGAGATTAGAAGATAT
CTTTGAAACAGATGAAGCGTGGGAGAAGGAATTTCAAGCTGTTAAAGCGTTAGTTCCAGAGATGGAGCAATATCGCGGAA
AGCTTGGAGAATCAGCAGACACGCTTTTTAAAGCATTGCAGCAGCAAGATGAACTAACAATGCGCGTCAGTAAGCTTTAT
ACATATGCACATATGAGGTATGACCAAGATACAACCAACTCATTCTATCAAGGATTAAATGATCGAATTAAAACGTTGTA
TACAGAAATTGCGAGTGCATTATCTTATGTCACGCCTGAACTTTTAGCAGTAGATGAGGCAACGCTAAAACAATATCTAG
AAGAAAGCAAGGATTTACAGCTATATGCACACGCGTTAGATGAAGTAAATCGTGAGCGTCCTCATATCCTTTCTGAGAGT
GAAGAAGCTATTTTAGCACAGGCGTCCGAAGCGCTAGGAGCATCAAGTAATACGTTCGGTATGCTGAATAATGCGGATTT
AGAGTTTCCATCTATTAAAGATGAAAACGGGGAAGAAGTGGAGATTACCCATGGTCGTTATATACGCTTTTTAGAAAGCA
GTGATCGCCGTGTTAGAGAAGATGCGTTTAAAGCCGTCTATGACACGTATGGTAAATTTAAAAATACATTTGCGAGCACT
CTTAGCGGAACAGTTAAAAAAGATAACTTTAGCGCTAAGGTCCGTAACTACGAATCAGCTCGTCATGCAGCTCTAAGCGC
AAACAATATTCCAGAAGAGGTATATGATAATTTAGTTGCCACGGTAAACGAATATCTGCCTCTGTTACAGCGCTATATTG
ACCTGCGAAAGAAAGTGTTAGGCGTTGATGAGCTTCACATGTATGATCTTTATACACCGCTTGTGCAAGACGTCAAAATG
GAAATACCATATAGCGAAGCAAAAGATTATTTATTAAAGGGCTTGGCACCACTTGGAGAAGAGTATATTTCCATTTTAAA
AGAAGGATTTGAAAACCGTTGGGTGGATGTGCACGAAAACAAAGGAAAGCGAAGCGGTGCTTATTCTTCTGGAACATATG
GAACAAATCCATATATTTTAATGAACTGGCAGGACAACGTGAACAATCTTTTCACATTAGCTCATGAGTTTGGTCATTCT
GTGCACAGTTACTATACGCGTAAAGAACAGCCTTACCCATACGGCGATTATTCAATCTTTGTCGCTGAAGTAGCATCTAC
GTGTAACGAAGCGTTATTAAATGATTATTTATTGAAAACAATCGACGATGAAAAGAAGAGATTGTACTTATTAAATCATT
ATTTAGAAGGCTTCCGCGGTACCGTGTTCCGTCAAACGATGTTCGCTGAGTTTGAGCATGAAATCCACGTTCGAGCTCAA
AATGGTGAACCGCTAACACCAGAGTTGTTAACGAAGCTATACTATGATTTAAATAAAAAGTATTTTGGTGATAATTTAGT
CATTGATGAAGAAATTGGCTTAGAGTGGGCGAGAATCCCACACTTCTACTACAATTACTATGTGTATCAATACGCAACAG
GCTTCAGCGCAGCTGCAGCGTTAAGCAAACAAATTCTTGAAGAAGGGGATGCGGCTGTTGAACGTTACCTTGGCTTCTTA
AAAGCTGGAAGCTCTGATTACCCAATTGAAGTGCTGAAACGCGCAGGAGTTGATATGACAACTGCTGAGCCAATCAAAGA
AGCATTAGAAGTATTTAAAGAAAAGCTTGAAGAGATGGAACGTTTGTTAGAGAACAACTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.41

97.855

0.484

Multiple sequence alignment