Detailed information NTG1008513

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H1C97_RS12905
• Genome accession: NZ_LR778151
• Coordinates: 2668926..2669918 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate SC476
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2663926..2674918

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1C97_RS12880	ygbN	2664581..2665945 (+)	1365	WP_000104429.1	GntP family transporter	-
H1C97_RS12885	-	2665984..2666220 (-)	237	WP_000562992.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
H1C97_RS12890	-	2666231..2667658 (-)	1428	WP_000863194.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
H1C97_RS12895	-	2667658..2668251 (-)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
H1C97_RS12900	-	2668398..2668805 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
H1C97_RS12905	rpoS	2668926..2669918 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H1C97_RS12910	nlpD	2669981..2671075 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
H1C97_RS12915	pcm	2671260..2671886 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H1C97_RS12920	surE	2671880..2672641 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H1C97_RS12925	truD	2672622..2673671 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
H1C97_RS12930	ispF	2673668..2674147 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H1C97_RS12935	ispD	2674147..2674857 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1008513 H1C97_RS12905 WP_000081550.1 2668926..2669918(-) (rpoS) [Escherichia coli isolate SC476]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1008513 H1C97_RS12905 WP_000081550.1 2668926..2669918(-) (rpoS) [Escherichia coli isolate SC476]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715