Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABM478_RS21165 Genome accession   NZ_CP157848
Coordinates   4151344..4153083 (-) Length   579 a.a.
NCBI ID   WP_000947768.1    Uniprot ID   -
Organism   Bacillus cereus strain B9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4146344..4158083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABM478_RS21135 - 4146576..4146809 (+) 234 WP_001190211.1 DUF2627 domain-containing protein -
  ABM478_RS21140 - 4146859..4147587 (-) 729 WP_000172575.1 glycerophosphodiester phosphodiesterase -
  ABM478_RS21145 - 4147638..4147784 (+) 147 WP_001247671.1 YycC family protein -
  ABM478_RS21150 - 4148026..4148589 (-) 564 WP_000428229.1 PRK06770 family protein -
  ABM478_RS21155 spo0A 4148842..4149636 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  ABM478_RS21160 spoIVB 4149927..4151225 (-) 1299 WP_002000940.1 SpoIVB peptidase -
  ABM478_RS21165 recN 4151344..4153083 (-) 1740 WP_000947768.1 DNA repair protein RecN Machinery gene
  ABM478_RS21170 argR 4153348..4153797 (-) 450 WP_001032580.1 arginine repressor ArgR -
  ABM478_RS21175 - 4153940..4154779 (-) 840 WP_000111875.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  ABM478_RS21180 dxs 4154783..4156675 (-) 1893 WP_000366452.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ABM478_RS21185 ispA 4156977..4157867 (-) 891 WP_000150379.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65849.96 Da        Isoelectric Point: 4.8277

>NTDB_id=1008485 ABM478_RS21165 WP_000947768.1 4151344..4153083(-) (recN) [Bacillus cereus strain B9]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNVEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=1008485 ABM478_RS21165 WP_000947768.1 4151344..4153083(-) (recN) [Bacillus cereus strain B9]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCAATTAGTTTACTTGTAGGTGGCCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAGAAGGCTGAGATTGAAGGGCTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCACG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAATTA
GACATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAGCAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAGGCGGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCC
GACGGACAAGGGTTAGATAATGTAAGAAGTGCAATGGGGCAAATGGAAAGTATTACACATTTAGATGAAGTGTATCAGGA
GAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAGGTTGCCTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAGGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACACCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGTAGAAGAGCCCCTTGTGGAAGGTGCGCCGGTAAGACTTACGGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCATCTGGCGGAGAGTTATCTCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCAGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCGGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATCACAGATTTAACGACAGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment