Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ABM478_RS09640 Genome accession   NZ_CP157848
Coordinates   1870774..1871061 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain B9     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1865774..1876061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABM478_RS09620 - 1866948..1867145 (+) 198 WP_001048091.1 DUF4083 domain-containing protein -
  ABM478_RS09625 - 1867177..1867638 (+) 462 WP_000024999.1 NUDIX hydrolase -
  ABM478_RS09630 nadE 1867688..1868506 (-) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  ABM478_RS09635 - 1868777..1870657 (+) 1881 WP_001025988.1 ABC transporter permease -
  ABM478_RS09640 abrB 1870774..1871061 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ABM478_RS09645 - 1871337..1872284 (+) 948 WP_086402051.1 serine protease -
  ABM478_RS09650 - 1872326..1872634 (-) 309 WP_001259906.1 helix-turn-helix transcriptional regulator -
  ABM478_RS09655 - 1872741..1873676 (+) 936 WP_000877965.1 aldo/keto reductase -
  ABM478_RS09660 - 1873724..1874899 (+) 1176 WP_121868372.1 MFS transporter -
  ABM478_RS09665 - 1874948..1875154 (+) 207 WP_001101741.1 hypothetical protein -
  ABM478_RS09670 - 1875298..1875660 (+) 363 WP_001198796.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=1008474 ABM478_RS09640 WP_000648324.1 1870774..1871061(+) (abrB) [Bacillus cereus strain B9]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1008474 ABM478_RS09640 WP_000648324.1 1870774..1871061(+) (abrB) [Bacillus cereus strain B9]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment