Detailed information    

insolico Bioinformatically predicted

Overview


Name   agrA   Type   Regulator
Locus tag   UXR36_RS10260 Genome accession   NZ_CP157773
Coordinates   2056209..2056925 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain BSN89     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2051209..2061925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXR36_RS10230 (UXR36_010230) - 2051425..2052051 (+) 627 WP_000522375.1 nitroreductase family protein -
  UXR36_RS10235 (UXR36_010235) - 2052412..2053197 (+) 786 WP_000867944.1 carbon-nitrogen family hydrolase -
  UXR36_RS10240 (UXR36_010240) - 2053798..2053932 (-) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  UXR36_RS10245 (UXR36_010245) agrB 2054167..2054736 (+) 570 WP_001105708.1 accessory gene regulator AgrB -
  UXR36_RS10250 (UXR36_010250) agrD 2054733..2054873 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  UXR36_RS10255 (UXR36_010255) agrC 2054898..2056190 (+) 1293 WP_001657119.1 quorum-sensing sensor histidine kinase AgrC -
  UXR36_RS10260 (UXR36_010260) agrA 2056209..2056925 (+) 717 WP_000688492.1 LytTR family DNA-binding domain-containing protein Regulator
  UXR36_RS10265 (UXR36_010265) - 2056997..2057104 (+) 108 WP_031785433.1 hypothetical protein -
  UXR36_RS10270 (UXR36_010270) - 2057294..2058253 (-) 960 WP_001253295.1 carbohydrate kinase -
  UXR36_RS10275 (UXR36_010275) - 2058250..2059734 (-) 1485 WP_000141419.1 sucrose-6-phosphate hydrolase -
  UXR36_RS10280 (UXR36_010280) - 2059883..2060833 (-) 951 WP_000790314.1 LacI family DNA-binding transcriptional regulator -

Sequence


Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=1008280 UXR36_RS10260 WP_000688492.1 2056209..2056925(+) (agrA) [Staphylococcus aureus strain BSN89]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1008280 UXR36_RS10260 WP_000688492.1 2056209..2056925(+) (agrA) [Staphylococcus aureus strain BSN89]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATCAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAGGATGATCCAGCAGAATTAAGAACACGTATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCTGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACTAAGTCACACAGACTCATTGCGCATTTAGACAATCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGCTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATTG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1


Multiple sequence alignment