Detailed information NTG1008199

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H1D11_RS07925
• Genome accession: NZ_LR778147
• Coordinates: 1716510..1717502 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate SC418
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1711510..1722502

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1D11_RS07895	ispD	1711571..1712281 (+)	711	WP_000246154.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H1D11_RS07900	ispF	1712281..1712760 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H1D11_RS07905	truD	1712757..1713806 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
H1D11_RS07910	surE	1713787..1714548 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
H1D11_RS07915	pcm	1714542..1715168 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H1D11_RS07920	nlpD	1715353..1716447 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H1D11_RS07925	rpoS	1716510..1717502 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H1D11_RS07930	-	1717623..1718030 (-)	408	WP_001208066.1	MarR family transcriptional regulator	-
H1D11_RS07935	-	1718177..1718770 (+)	594	WP_001237176.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
H1D11_RS07940	-	1718770..1720197 (+)	1428	Protein_1564	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
H1D11_RS07945	-	1720208..1720444 (+)	237	WP_000562983.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
H1D11_RS07950	pphB	1720486..1721142 (-)	657	WP_001139307.1	protein-serine/threonine phosphatase	-
H1D11_RS07955	-	1721167..1722030 (-)	864	WP_115423477.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1008199 H1D11_RS07925 WP_000081550.1 1716510..1717502(+) (rpoS) [Escherichia coli isolate SC418]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1008199 H1D11_RS07925 WP_000081550.1 1716510..1717502(+) (rpoS) [Escherichia coli isolate SC418]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715