Detailed information NTG1008167

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: H1D11_RS01105
• Genome accession: NZ_LR778147
• Coordinates: 261801..262826 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli isolate SC418
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 256801..267826

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1D11_RS01085	metJ	257986..258303 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
H1D11_RS01090	yiiX	258363..258971 (+)	609	WP_001577479.1	YiiX family permuted papain-like enzyme	-
H1D11_RS01095	rpmE	259032..259244 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
H1D11_RS01100	priA	259447..261645 (+)	2199	WP_001586520.1	primosomal protein N'	Machinery gene
H1D11_RS01105	cytR	261801..262826 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
H1D11_RS01110	ftsN	262918..263877 (+)	960	WP_000068828.1	cell division protein FtsN	-
H1D11_RS01115	hslV	263970..264500 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
H1D11_RS01120	hslU	264510..265841 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
H1D11_RS01125	menA	265908..266834 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
H1D11_RS01130	rraA	266927..267412 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
H1D11_RS01135	zapB	267497..267742 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=1008167 H1D11_RS01105 WP_000644904.1 261801..262826(+) (cytR) [Escherichia coli isolate SC418]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1008167 H1D11_RS01105 WP_000644904.1 261801..262826(+) (cytR) [Escherichia coli isolate SC418]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTTGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGTTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628