Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AAN986_RS27855 Genome accession   NZ_CP157763
Coordinates   6178444..6180060 (-) Length   538 a.a.
NCBI ID   WP_047219513.1    Uniprot ID   -
Organism   Delftia sp. DS1230     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6173444..6185060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAN986_RS27840 - 6174052..6174897 (-) 846 WP_047219510.1 hypothetical protein -
  AAN986_RS27845 - 6174971..6176110 (-) 1140 WP_047219511.1 slipin family protein -
  AAN986_RS27850 rtcR 6176809..6178422 (+) 1614 WP_047219512.1 RNA repair transcriptional activator RtcR -
  AAN986_RS27855 rpoN/rpoN1 6178444..6180060 (-) 1617 WP_047219513.1 RNA polymerase factor sigma-54 Machinery gene
  AAN986_RS27860 lptB 6180115..6180912 (-) 798 WP_016450697.1 LPS export ABC transporter ATP-binding protein -
  AAN986_RS27865 lptA 6180909..6181571 (-) 663 WP_016454602.1 lipopolysaccharide transport periplasmic protein LptA -
  AAN986_RS27870 - 6181744..6182394 (-) 651 WP_047219514.1 thiol:disulfide interchange protein DsbA/DsbL -
  AAN986_RS27875 - 6182476..6183165 (-) 690 WP_047219515.1 SPOR domain-containing protein -
  AAN986_RS27880 argS 6183186..6184883 (-) 1698 WP_016450693.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 59277.36 Da        Isoelectric Point: 4.6285

>NTDB_id=1008157 AAN986_RS27855 WP_047219513.1 6178444..6180060(-) (rpoN/rpoN1) [Delftia sp. DS1230]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLGDNPFLELANDDGDHEAASSAPEPAAPGADAADSFQESR
ADQPSAAVEWEAPSDTSSGDAVETSGTAESLSWEGDGQTNSGNDDRDWGSDAPSSRTRGQGDDDETDATELARSAESLTD
HLHRQALSLRLGEVDRAALRFLIENLNDDGYLEDPLDELAQGLAGDNLEECEELVHRFTVALRLLQSLEPVGVGARDLAE
CLTLQLRDQLADAEREGNGSAEDEDRQAVLRTALDICAQPMDLLARRDLRKLASLCGAREERLREALVLITRLEPRPGRR
FADVQRQIVVPDVIVRPVRMGAGRMEFSVQLNPDVMPKLRVHDIYASALRSHRGSEGHAALQQRLQEARWFIKNIQQRFD
TILRVSQAIVERQKNFFVHGELAMRPLVLRDIADALGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTEAGGNASST
AVRALIKQFVAAEDPRKPLSDNQLADMLKEQGIECARRTVAKYRELLKIPPTTLRKAL

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=1008157 AAN986_RS27855 WP_047219513.1 6178444..6180060(-) (rpoN/rpoN1) [Delftia sp. DS1230]
TTGAAGCCCGGACTGTCGCTGCGCGTCTCCCAGCATCTTTCGCTCACCCCGCAACTGCAGCAGTCGATACAGCTGCTGCA
GCTGTCCACGCTGGAGCTGGCGCAGGAAGTGGAGCAGATGCTGGGCGACAACCCCTTCCTGGAGCTGGCGAACGACGACG
GCGACCACGAAGCGGCAAGCAGCGCCCCGGAGCCTGCGGCGCCCGGCGCCGACGCCGCGGACTCCTTCCAGGAAAGCCGT
GCGGACCAGCCATCGGCTGCGGTGGAATGGGAGGCGCCGTCGGACACATCCTCCGGCGATGCCGTCGAGACCTCCGGCAC
GGCCGAATCCCTGAGCTGGGAAGGCGATGGCCAGACCAACTCGGGCAACGACGACCGCGACTGGGGCAGCGATGCGCCTT
CCAGCCGCACGCGCGGCCAGGGTGACGATGACGAGACCGATGCCACCGAGCTGGCACGCAGCGCAGAAAGCCTGACCGAC
CATCTGCACCGCCAGGCCCTGAGCCTGCGCCTGGGCGAGGTGGATCGTGCCGCGCTGCGCTTTCTGATCGAGAACCTCAA
CGACGACGGCTACCTGGAAGACCCGCTCGACGAGCTGGCACAGGGCCTGGCGGGCGACAACCTGGAGGAGTGCGAGGAAC
TGGTGCACCGCTTCACCGTGGCGCTGCGCCTGTTGCAAAGCCTGGAGCCGGTGGGCGTGGGCGCGCGCGACCTGGCCGAA
TGCCTGACGCTGCAACTGCGCGACCAGCTGGCCGATGCCGAGCGCGAAGGCAACGGCAGTGCCGAGGACGAAGACCGCCA
GGCCGTGCTGCGCACCGCGCTGGACATCTGCGCCCAGCCCATGGACCTGCTGGCGCGGCGCGACCTGCGCAAGCTCGCCA
GCCTGTGCGGTGCGCGCGAGGAGCGGCTGCGCGAGGCGCTGGTGCTGATCACCCGGCTGGAGCCACGCCCTGGCCGGCGC
TTTGCCGACGTGCAGCGCCAGATCGTCGTGCCCGATGTCATCGTGCGCCCGGTGCGCATGGGTGCGGGACGCATGGAGTT
CAGCGTGCAACTCAACCCCGATGTCATGCCCAAGCTGCGCGTGCACGACATCTATGCCAGCGCGCTGCGCAGCCACCGGG
GCAGCGAAGGCCATGCGGCGCTGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGAC
ACCATCCTGCGCGTGTCGCAGGCCATCGTGGAGCGCCAGAAGAACTTCTTCGTGCATGGCGAGCTGGCCATGCGCCCGCT
GGTGCTGCGCGACATTGCCGATGCGCTGGGCCTGCATGAGTCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCA
CGCCGCAGGGCACCTACGAACTCAAGTATTTCTTCGGCTCGGGCCTGGGCACCGAGGCGGGCGGCAACGCGTCGAGCACG
GCCGTGCGCGCGCTCATCAAGCAGTTCGTCGCAGCCGAGGACCCCAGGAAGCCGCTGTCGGACAACCAGCTGGCCGACAT
GCTCAAGGAGCAGGGCATCGAATGCGCACGGCGCACCGTGGCCAAGTACCGCGAGCTGCTCAAGATCCCGCCGACCACGC
TGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(380-536)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(149-365)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.926

100

0.511

Multiple sequence alignment