Detailed information NTG1008153

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H1D08_RS21880
• Genome accession: NZ_LR778146
• Coordinates: 4524884..4525876 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate SC455
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4519884..4530876

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1D08_RS21850	ispD	4519945..4520655 (+)	711	WP_175058725.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H1D08_RS21855	ispF	4520655..4521134 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H1D08_RS21860	truD	4521131..4522180 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
H1D08_RS21865	surE	4522161..4522922 (+)	762	WP_001374596.1	5'/3'-nucleotidase SurE	-
H1D08_RS21870	pcm	4522916..4523542 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H1D08_RS21875	nlpD	4523727..4524821 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H1D08_RS21880	rpoS	4524884..4525876 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H1D08_RS21885	-	4526051..4526602 (-)	552	WP_001179442.1	flavodoxin family protein	-
H1D08_RS21890	-	4526827..4527870 (+)	1044	WP_180344723.1	MBL fold metallo-hydrolase	-
H1D08_RS21895	ygbN	4528013..4529377 (-)	1365	WP_000104433.1	GntP family transporter	-
H1D08_RS21900	ygbM	4529466..4530242 (-)	777	WP_001357575.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1008153 H1D08_RS21880 WP_000081550.1 4524884..4525876(+) (rpoS) [Escherichia coli isolate SC455]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1008153 H1D08_RS21880 WP_000081550.1 4524884..4525876(+) (rpoS) [Escherichia coli isolate SC455]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715