Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAN986_RS01640 Genome accession   NZ_CP157763
Coordinates   372532..373917 (+) Length   461 a.a.
NCBI ID   WP_016448587.1    Uniprot ID   A0AAX3SMY1
Organism   Delftia sp. DS1230     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 367532..378917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAN986_RS01615 lplT 368352..369653 (-) 1302 WP_016448591.1 lysophospholipid transporter LplT -
  AAN986_RS01620 alr 369788..370891 (+) 1104 WP_047218852.1 alanine racemase -
  AAN986_RS01625 - 370892..371332 (-) 441 WP_016448589.1 MarR family transcriptional regulator -
  AAN986_RS01630 - 371429..372244 (+) 816 WP_047218851.1 siderophore-interacting protein -
  AAN986_RS01640 radA 372532..373917 (+) 1386 WP_016448587.1 DNA repair protein RadA Machinery gene
  AAN986_RS01645 - 374001..374447 (+) 447 WP_046239701.1 hypothetical protein -
  AAN986_RS01650 - 374492..375430 (+) 939 WP_016453623.1 branched-chain amino acid transaminase -
  AAN986_RS01655 - 375552..375761 (+) 210 WP_012202256.1 zinc-finger domain-containing protein -
  AAN986_RS01660 - 375793..376653 (-) 861 WP_047218849.1 capsular polysaccharide synthesis protein -
  AAN986_RS01665 - 376784..378052 (+) 1269 WP_047218848.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48096.64 Da        Isoelectric Point: 7.6673

>NTDB_id=1008138 AAN986_RS01640 WP_016448587.1 372532..373917(+) (radA) [Delftia sp. DS1230]
MAKDKTTFICNACGGSSPRWLGKCPACGAWNSLIEAVAEPAGAGKNRLSQPQGYAGLANAQAVMPLSAIEAQDVARTPSG
IEELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALHRVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQL
EKILATMEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITVILVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAPRRLSVGLDRDRLAMLLAVLSRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKGFLAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPKKAIPGLTVHAVERVDEAMNIVRGMG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1008138 AAN986_RS01640 WP_016448587.1 372532..373917(+) (radA) [Delftia sp. DS1230]
ATGGCCAAAGACAAAACCACGTTCATCTGCAATGCCTGCGGCGGCTCCAGCCCGCGCTGGCTGGGCAAGTGCCCGGCCTG
CGGGGCCTGGAATTCGCTGATCGAGGCCGTTGCCGAGCCTGCGGGCGCGGGCAAGAACCGGCTCAGCCAGCCGCAGGGCT
ATGCGGGCCTGGCCAATGCCCAGGCCGTGATGCCGCTGTCGGCCATCGAGGCCCAGGACGTGGCGCGCACGCCCAGCGGC
ATCGAGGAGCTGGACCGCGTGCTGGGCGGCGGCATTGTCGAAGGCGGCGTGGTGCTGATTGGTGGCGACCCCGGCATCGG
CAAGTCCACCCTGCTGCTGCAGGCCATGGATGCGCTGCACCGCGTGGGCCTGCCCACGCTGTATGTGACCGGCGAGGAAA
GCGGTGCCCAGGTCGCGCTGCGTTCGCGCCGCCTGGGGCTGGAGGCCAGCCAGGTCAATGTGCTGGCCGAGATCCAGCTG
GAGAAGATCCTCGCCACCATGGAGGCCACGCAGCCGGCCGTGGTCGTCATCGACTCCATTCAGACCGTGTACTCGGACCA
GCTGTCCTCGGCGCCGGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCGCGGCCAAGACCACGGGCA
TCACCGTGATCCTGGTCGGCCATGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACC
GTGCTCTACTTCGAGGGCGACACGCACAGCAACTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGTGCCGTCAACGA
GATCGGCGTCTTCGCCATGACGGAGAAGGGCCTCAAGGGCGTCACCAACCCCAGCGCCATCTTCCTGTCCCAGCACAGCG
AGCCGGTGCCGGGCTCCTGCGTGCTGGTCACGCTGGAGGGCACGCGGCCCATGCTGGTGGAAATACAGGCCCTGGTCGAC
CAGGGCGGCCCCGCGCCCCGGCGCCTGTCCGTGGGCCTGGACCGGGACCGGCTGGCCATGCTGCTGGCCGTGCTCAGCCG
CCATGCGGGCGTGGCCTGCGCGGACCAGGATGTCTTCGTCAATGCCGTGGGCGGCGTGCGCATCAGCGAGCCTGCGGCCG
ACCTGGCCGTGATGCTGTCCATCACCTCCAGCCTGCGCGGCCGCGCCCTGCCCAAGGGATTCCTGGCCTTTGGCGAAGTG
GGCCTGGCCGGCGAAGTGCGCCCCGCGCCGCGAGGCCAGGAGCGCCTGAAGGAAGCCGCCAAGCTCGGCTTCACCATGGC
CGTGGTGCCCAAGGCCAATGCGCCCAAGAAGGCCATCCCCGGCCTGACCGTGCATGCCGTGGAGCGCGTGGACGAAGCCA
TGAACATCGTCCGAGGGATGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

98.915

0.482
  radA Streptococcus mitis NCTC 12261

47.368

98.915

0.469
  radA Streptococcus pneumoniae Rx1

48.19

95.879

0.462
  radA Streptococcus pneumoniae D39

48.19

95.879

0.462
  radA Streptococcus pneumoniae R6

48.19

95.879

0.462
  radA Streptococcus pneumoniae TIGR4

48.19

95.879

0.462
  radA Streptococcus mitis SK321

48.961

93.926

0.46

Multiple sequence alignment