Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABL163_RS12160 Genome accession   NZ_CP157671
Coordinates   2518522..2519136 (-) Length   204 a.a.
NCBI ID   WP_032873955.1    Uniprot ID   -
Organism   Bacillus velezensis strain TZ01     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2513522..2524136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL163_RS12130 rpsT 2513825..2514091 (+) 267 WP_003152876.1 30S ribosomal protein S20 -
  ABL163_RS12135 holA 2514108..2515149 (-) 1042 Protein_2342 DNA polymerase III subunit delta -
  ABL163_RS12140 - 2515189..2515340 (-) 152 Protein_2343 hypothetical protein -
  ABL163_RS12145 - 2515381..2515515 (+) 135 WP_003152870.1 YqzM family protein -
  ABL163_RS12150 comEC 2515534..2517885 (-) 2352 WP_032873958.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABL163_RS12155 - 2517886..2518455 (-) 570 WP_003152868.1 ComE operon protein 2 -
  ABL163_RS12160 comEA 2518522..2519136 (-) 615 WP_032873955.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABL163_RS12165 comER 2519195..2520016 (+) 822 WP_012118027.1 late competence protein ComER -
  ABL163_RS12170 - 2520085..2520822 (-) 738 WP_032873951.1 class I SAM-dependent methyltransferase -
  ABL163_RS12175 rsfS 2520819..2521175 (-) 357 WP_007408260.1 ribosome silencing factor -
  ABL163_RS12180 yqeK 2521179..2521754 (-) 576 WP_032873949.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ABL163_RS12185 - 2521744..2522313 (-) 570 WP_007408258.1 nicotinate-nucleotide adenylyltransferase -
  ABL163_RS12190 yhbY 2522324..2522614 (-) 291 WP_003152858.1 ribosome assembly RNA-binding protein YhbY -
  ABL163_RS12195 aroE 2522608..2523450 (-) 843 WP_032873946.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22265.47 Da        Isoelectric Point: 6.4940

>NTDB_id=1007993 ABL163_RS12160 WP_032873955.1 2518522..2519136(-) (comEA) [Bacillus velezensis strain TZ01]
MTKAMMTERLRRNLKILGACLVAGAVFICIWLFRSEKEEPVKQQSVLGQTASASVADKKDTADDKIMIDLKGAVRNPGVY
EMKAGDRVTQAIEKAGGLKKKADELNVNLAEQLQDGTIVYIPSEGEEENRPKTAAGEKENAAVNINTASLDELQAISGVG
QKKAEAIIAYREEKGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1007993 ABL163_RS12160 WP_032873955.1 2518522..2519136(-) (comEA) [Bacillus velezensis strain TZ01]
ATGACGAAAGCGATGATGACGGAGCGGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGTAGCAGGGGCGGTTTT
TATCTGCATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCCGTGCTCGGCCAAACAGCCTCAGCAT
CCGTCGCGGACAAAAAAGACACCGCAGACGACAAGATTATGATTGATTTGAAAGGCGCGGTCCGAAATCCCGGCGTGTAT
GAAATGAAAGCGGGAGACAGAGTGACTCAAGCCATTGAAAAAGCCGGCGGCCTGAAGAAAAAGGCGGATGAATTGAACGT
TAATTTAGCAGAGCAGCTGCAGGACGGGACGATTGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGCCCGAAAACAG
CAGCGGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTCTGGACGAACTTCAGGCGATTTCCGGGGTGGGG
CAGAAAAAAGCGGAAGCGATTATCGCCTACCGAGAAGAAAAAGGACGGTTTCAGACTGCTGAAGATTTGATGAATGTATC
AGGCTTTGGAGAAAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(141-202)

SLBB domain (SLBB)

(68-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

58.115

93.627

0.544
  comEA Latilactobacillus sakei subsp. sakei 23K

31.897

100

0.363

Multiple sequence alignment