Detailed information NTG1007911

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABL841_RS19505
• Genome accession: NZ_CP157636
• Coordinates: 4131236..4132474 (+)
• Length: 412 a.a.
• NCBI ID: WP_418148816.1
• Uniprot ID: -
• Organism: Variovorax paradoxus strain 4MFCol3.1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4126236..4137474

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABL841_RS19485 (ABL841_19465)	-	4126739..4127374 (-)	636	WP_018906722.1	LysE/ArgO family amino acid transporter	-
ABL841_RS19490 (ABL841_19470)	-	4127456..4128373 (+)	918	WP_018906721.1	LysR family transcriptional regulator ArgP	-
ABL841_RS19495 (ABL841_19475)	-	4128385..4129731 (-)	1347	WP_015867142.1	M16 family metallopeptidase	-
ABL841_RS19500 (ABL841_19480)	-	4129749..4131206 (-)	1458	WP_026284247.1	M16 family metallopeptidase	-
ABL841_RS19505 (ABL841_19485)	pilA	4131236..4132474 (+)	1239	WP_418148816.1	signal recognition particle-docking protein FtsY	Machinery gene
ABL841_RS19510 (ABL841_19490)	-	4132499..4133536 (-)	1038	WP_418148817.1	hypothetical protein	-
ABL841_RS19515 (ABL841_19495)	-	4133686..4135464 (-)	1779	WP_018906718.1	hybrid sensor histidine kinase/response regulator	-
ABL841_RS19520 (ABL841_19500)	-	4135475..4136188 (-)	714	WP_038108002.1	response regulator transcription factor	-
ABL841_RS19525 (ABL841_19505)	-	4136356..4136820 (+)	465	WP_018906716.1	DUF962 domain-containing protein	-

Sequence

Protein

• Length: 412 a.a.
• Molecular weight: 42592.17 Da
• Isoelectric Point: 5.5473

>NTDB_id=1007911 ABL841_RS19505 WP_418148816.1 4131236..4132474(+) (pilA) [Variovorax paradoxus strain 4MFCol3.1]
MFSFFKKKPPAESPAAPAPSPAAEPAAAPEPAPAPAAAPARSVFSPSSWFGSKPAAEEAAPPPAAPPVAPPPPPPTVAPP
AAPVPAPAPAPAPAPAPVPAPAPAVLTEAAMPAERKGWFDKLKTGLRKTGTGIQAVFVNAQIDEALYEELESALLMADAG
VKATEFLLDDLRGRVKRQMATDAAQVKRLLADAITDLLQPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKLTKHLASEG
ASVLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVTAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKR
VVTKADATAPHEVLLVIDGNTGQNALAQVRAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLET
FNAREFALALLG

Nucleotide

• Length: 1239 bp

>NTDB_id=1007911 ABL841_RS19505 WP_418148816.1 4131236..4132474(+) (pilA) [Variovorax paradoxus strain 4MFCol3.1]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAATCCCCGGCCGCGCCGGCGCCCTCACCGGCCGCCGAGCCGGCCGC
TGCGCCCGAACCCGCGCCTGCGCCCGCTGCCGCACCCGCGCGCTCGGTGTTCTCTCCGTCGAGCTGGTTCGGTTCGAAGC
CTGCCGCGGAGGAAGCGGCGCCTCCGCCTGCAGCGCCCCCGGTGGCGCCTCCTCCGCCGCCACCCACGGTTGCGCCACCC
GCCGCACCCGTGCCTGCACCTGCACCTGCACCGGCACCGGCACCCGCACCGGTGCCCGCTCCCGCTCCCGCCGTCCTCAC
CGAAGCCGCCATGCCCGCCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGACCGGCCTGCGCAAGACCGGCACCGGCATCC
AGGCCGTGTTCGTCAACGCGCAGATCGACGAAGCGCTGTACGAGGAGCTCGAATCGGCCCTGCTGATGGCCGACGCCGGC
GTCAAGGCCACCGAGTTCCTGCTCGACGACCTGCGCGGCCGCGTCAAACGCCAGATGGCGACCGATGCGGCGCAAGTGAA
GCGGCTGCTGGCCGATGCCATCACCGACCTGCTCCAGCCGCTCGAGAAGCCGCTGGTGATCGGCCAGTTCACACCGACGG
TGATCATGGTGGCGGGCGTCAACGGCGCCGGCAAGACCACCTCGATCGGCAAGCTCACCAAGCACCTGGCCAGCGAAGGC
GCCTCGGTGCTGCTGGCCGCGGCCGACACCTTCCGCGCGGCGGCGCGCGAGCAGCTGCTGGTCTGGGCCGACCGCAACAC
GGTCGAGATCGTGAGCCAGGAAGGCGGCGACCCGTCGGCCGTGAGCTTCGACGCGGTCACGGCCGGCAAGGCGCGTGGCA
AGGACGTGGTGCTGGTCGACACCGCCGGCCGGCTGCCGACGCAGCTGCACCTGATGGACGAACTCAAGAAGATCAAGCGC
GTCGTCACCAAGGCCGACGCCACCGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGGCAGAACGCCCTGGC
GCAGGTCCGGGCCTTCGACGAGACGCTGGGCCTCACCGGCCTGGTGGTGACCAAGCTCGACGGCACGGCCAAGGGCGGCG
TGCTCTGCGCGATTGCGCGCGAGCGGCCGATCCCGGTCTACTTCATCGGCGTGGGCGAGAAGCTGGAAGACCTCGAGACC
TTCAACGCGCGCGAGTTCGCGCTGGCGCTGCTGGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (130-193)

• SRP54-type protein, GTPase domain (SRP54) (212-411)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.926	100	0.498