Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABL839_RS25240 Genome accession   NZ_CP157634
Coordinates   5414549..5414947 (-) Length   132 a.a.
NCBI ID   WP_019656274.1    Uniprot ID   A0A3S0AQK8
Organism   Variovorax paradoxus strain 110B     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5409549..5419947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL839_RS25225 (ABL839_25245) - 5411281..5413587 (-) 2307 WP_019656271.1 methyl-accepting chemotaxis protein -
  ABL839_RS25230 (ABL839_25250) - 5413631..5414164 (-) 534 WP_019656272.1 chemotaxis protein CheW -
  ABL839_RS25235 (ABL839_25255) - 5414184..5414549 (-) 366 WP_019656273.1 response regulator transcription factor -
  ABL839_RS25240 (ABL839_25260) pilG 5414549..5414947 (-) 399 WP_019656274.1 response regulator Regulator
  ABL839_RS25245 (ABL839_25265) - 5415032..5415202 (-) 171 WP_007838397.1 rubredoxin -
  ABL839_RS25250 (ABL839_25270) thiD 5415314..5416279 (+) 966 WP_019656275.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ABL839_RS25255 (ABL839_25275) hemL 5416380..5417666 (+) 1287 WP_019656276.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ABL839_RS25260 (ABL839_25280) - 5417672..5418157 (+) 486 WP_019656277.1 hypothetical protein -
  ABL839_RS25265 (ABL839_25285) - 5418175..5418618 (-) 444 WP_026346545.1 hypothetical protein -
  ABL839_RS25270 (ABL839_25290) - 5418751..5419473 (+) 723 WP_019656279.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14666.77 Da        Isoelectric Point: 7.3215

>NTDB_id=1007896 ABL839_RS25240 WP_019656274.1 5414549..5414947(-) (pilG) [Variovorax paradoxus strain 110B]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGTVQQEAQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1007896 ABL839_RS25240 WP_019656274.1 5414549..5414947(-) (pilG) [Variovorax paradoxus strain 110B]
ATGGGCCCGAATGGATCTGGTTACAAGGTGCTGGTCATCGACGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTCT
GAAGCAGGGTGGGCATGAAGTTCTTCTCGCCGAGGACGGCTTTGACGCACTCTCCAAGGTCAACGACCACAAGCCGCACC
TGATTTTCTGCGACATCCTGATGCCGCGTCTCGACGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCCCACTTTTCC
AACGTCCCGGTCGTCATGCTGTCTTCGAAAGACGGTGTATTCGACAAGGCACGCGGCCGCATGGTCGGTTCCCAGGACTA
CCTGACCAAGCCTTTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCACCGTTCAACAGGAAGCGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S0AQK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment