Detailed information NTG1007895

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABL839_RS24060
• Genome accession: NZ_CP157634
• Coordinates: 5173809..5175083 (+)
• Length: 424 a.a.
• NCBI ID: WP_019658584.1
• Uniprot ID: -
• Organism: Variovorax paradoxus strain 110B
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5168809..5180083

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABL839_RS24040 (ABL839_24065)	-	5169196..5169834 (-)	639	WP_019658580.1	LysE/ArgO family amino acid transporter	-
ABL839_RS24045 (ABL839_24070)	-	5169923..5170837 (+)	915	WP_019658581.1	LysR family transcriptional regulator ArgP	-
ABL839_RS24050 (ABL839_24075)	-	5170930..5172321 (-)	1392	WP_019658582.1	M16 family metallopeptidase	-
ABL839_RS24055 (ABL839_24080)	-	5172337..5173731 (-)	1395	WP_026346865.1	M16 family metallopeptidase	-
ABL839_RS24060 (ABL839_24085)	pilA	5173809..5175083 (+)	1275	WP_019658584.1	signal recognition particle-docking protein FtsY	Machinery gene
ABL839_RS24065 (ABL839_24090)	-	5175306..5177135 (-)	1830	WP_019658585.1	ATP-binding protein	-
ABL839_RS24070 (ABL839_24095)	-	5177132..5177863 (-)	732	WP_019658586.1	response regulator transcription factor	-
ABL839_RS24075 (ABL839_24100)	-	5178049..5178513 (+)	465	WP_019658587.1	DUF962 domain-containing protein	-
ABL839_RS24080 (ABL839_24105)	-	5179178..5179813 (+)	636	WP_157773861.1	hypothetical protein	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 43603.29 Da
• Isoelectric Point: 5.5627

>NTDB_id=1007895 ABL839_RS24060 WP_019658584.1 5173809..5175083(+) (pilA) [Variovorax paradoxus strain 110B]
MFSFFKKKPPPEATEAPAATPPAPAAPAPEAAPSRSVFSPSSWFGSKPAAEEKPAPAPVAAPAPAPGPAPAVAPSPAAAP
VVLPSPPPAPAAPAPAPAPAPAPVPAPAPAPVAAAPVAEPAAIATERKGWFDKLKTGLRKTGTGIQAVFVNAKIDEDLYE
ELESALLMADTGVKATEFLLDDLRGRVKRQMATDASQVKALLAETVADLLKPLEKPLVIGQFTPTVIMVAGVNGAGKTTS
IGKLTKHLADEGASVLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVNAGKARGKDVVLVDTAGRLPTQ
LHLMDELKKIKRVVTKADGTAPHEVLLVIDGNTGQNALAQVKAFDETLGLTGLIVTKLDGTAKGGVLCAIAREKPIPVYF
IGVGEKLEDLETFNAREFAQALLG

Nucleotide

• Length: 1275 bp

>NTDB_id=1007895 ABL839_RS24060 WP_019658584.1 5173809..5175083(+) (pilA) [Variovorax paradoxus strain 110B]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTCCCGAGGCGACCGAAGCGCCGGCAGCCACCCCGCCGGCCCCGGCTGCGCC
TGCACCTGAAGCCGCGCCCTCGCGCTCGGTGTTCTCGCCTTCGAGCTGGTTCGGCTCGAAGCCGGCGGCGGAAGAAAAGC
CGGCGCCAGCGCCCGTCGCCGCACCGGCGCCCGCGCCAGGCCCTGCCCCCGCGGTGGCACCGTCACCGGCCGCAGCCCCG
GTCGTGCTGCCCTCCCCGCCCCCTGCGCCCGCGGCACCCGCCCCCGCCCCCGCCCCCGCCCCCGCGCCCGTACCCGCGCC
CGCGCCGGCTCCAGTCGCCGCCGCGCCGGTTGCCGAACCCGCCGCCATCGCCACCGAGCGCAAGGGCTGGTTCGACAAGC
TCAAGACCGGCCTGCGCAAGACCGGCACCGGCATCCAGGCCGTGTTCGTCAACGCGAAGATCGATGAGGATCTGTACGAG
GAACTCGAATCCGCCCTGCTGATGGCCGACACCGGCGTGAAGGCGACCGAGTTCCTGCTCGACGACCTGCGCGGCCGCGT
CAAGCGCCAGATGGCCACCGACGCCTCGCAGGTCAAGGCATTGCTGGCCGAGACCGTGGCCGACCTGCTGAAGCCGCTCG
AGAAGCCGCTGGTCATCGGCCAGTTCACGCCCACCGTGATCATGGTGGCCGGCGTCAACGGCGCGGGCAAGACCACCTCC
ATCGGCAAGCTCACCAAGCACCTGGCCGACGAAGGCGCCTCGGTGCTGCTGGCGGCGGCCGACACCTTCCGGGCGGCGGC
GCGCGAGCAGTTGCTGGTCTGGGCCGACCGCAACACCGTCGAGATCGTGAGCCAGGAAGGCGGCGACCCGTCGGCCGTGA
GCTTCGACGCGGTGAACGCCGGCAAGGCCCGCGGCAAGGACGTGGTGCTGGTCGACACGGCCGGCCGCCTGCCGACGCAG
CTGCACCTGATGGACGAGCTCAAGAAGATCAAGCGCGTCGTCACCAAGGCCGACGGCACGGCGCCGCACGAGGTGCTGCT
GGTGATCGACGGCAACACCGGCCAGAACGCGCTGGCGCAGGTCAAGGCCTTCGACGAGACGCTGGGCCTCACCGGGCTGA
TCGTGACCAAGCTCGATGGCACGGCCAAGGGCGGCGTGCTGTGCGCCATCGCGCGGGAAAAGCCGATTCCGGTCTACTTC
ATCGGTGTGGGCGAGAAGCTGGAAGACCTCGAAACCTTCAACGCCCGCGAATTCGCGCAGGCCCTGCTGGGATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (224-424)

• SRP54-type protein, helical bundle domain (SRP54_N) (142-204)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.372	100	0.491