Detailed information NTG1007888

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H1D10_RS15915
• Genome accession: NZ_LR778142
• Coordinates: 3259566..3260558 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate SC434
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3254566..3265558

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H1D10_RS15895	ygbM	3255200..3255976 (+)	777	WP_001357575.1	HPr family phosphocarrier protein	-
H1D10_RS15900	ygbN	3256065..3257429 (+)	1365	WP_000104433.1	GntP family transporter	-
H1D10_RS15905	-	3257572..3258615 (-)	1044	WP_180344723.1	MBL fold metallo-hydrolase	-
H1D10_RS15910	-	3258840..3259391 (+)	552	WP_001179442.1	flavodoxin family protein	-
H1D10_RS15915	rpoS	3259566..3260558 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H1D10_RS15920	nlpD	3260621..3261715 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H1D10_RS15925	pcm	3261900..3262526 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H1D10_RS15930	surE	3262520..3263281 (-)	762	WP_001374596.1	5'/3'-nucleotidase SurE	-
H1D10_RS15935	truD	3263262..3264311 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
H1D10_RS15940	ispF	3264308..3264787 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H1D10_RS15945	ispD	3264787..3265497 (-)	711	WP_175058725.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1007888 H1D10_RS15915 WP_000081550.1 3259566..3260558(-) (rpoS) [Escherichia coli isolate SC434]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1007888 H1D10_RS15915 WP_000081550.1 3259566..3260558(-) (rpoS) [Escherichia coli isolate SC434]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715