Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABL839_RS03115 Genome accession   NZ_CP157634
Coordinates   675205..676806 (+) Length   533 a.a.
NCBI ID   WP_019655630.1    Uniprot ID   -
Organism   Variovorax paradoxus strain 110B     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 670205..681806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL839_RS03095 (ABL839_03085) - 671760..672539 (+) 780 WP_020723165.1 SPOR domain-containing protein -
  ABL839_RS03100 (ABL839_03090) - 672696..673343 (+) 648 WP_019655627.1 thiol:disulfide interchange protein DsbA/DsbL -
  ABL839_RS03105 (ABL839_03095) lptA 673543..674259 (+) 717 WP_019655628.1 lipopolysaccharide transport periplasmic protein LptA -
  ABL839_RS03110 (ABL839_03100) lptB 674256..675050 (+) 795 WP_019655629.1 LPS export ABC transporter ATP-binding protein -
  ABL839_RS03115 (ABL839_03105) rpoN/rpoN1 675205..676806 (+) 1602 WP_019655630.1 RNA polymerase factor sigma-54 Machinery gene
  ABL839_RS03120 (ABL839_03110) - 676942..678504 (+) 1563 WP_020723166.1 phospholipase D family protein -
  ABL839_RS03125 (ABL839_03115) - 678515..679162 (-) 648 WP_019655632.1 LysE family translocator -
  ABL839_RS03130 (ABL839_03120) - 679212..679859 (-) 648 WP_019655633.1 YceI family protein -
  ABL839_RS03135 (ABL839_03125) - 679939..680556 (-) 618 WP_038115203.1 YceI family protein -
  ABL839_RS03140 (ABL839_03130) - 680553..681149 (-) 597 WP_026346491.1 cytochrome b -

Sequence

Protein


Download         Length: 533 a.a.        Molecular weight: 58473.53 Da        Isoelectric Point: 4.5801

>NTDB_id=1007887 ABL839_RS03115 WP_019655630.1 675205..676806(+) (rpoN/rpoN1) [Variovorax paradoxus strain 110B]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAVREEFGLDTADAPVPRDDGGDGTDGE
GDFAPSAASSSSATSSTEGTAVADADGPAAEIAEREPDWEGDGTVDMAPDDSEWGSDAPARQNNAGDDERADATELARSQ
ESLQSFLHRQALSLRLNESDSAALRFLIESLNEDGYLEDSLPALASGLAGDDNDEFDDLVHHFQVALGLLQSLEPAGVGA
RDLGECLSIQLRAMASDDETEEEELVRKTALAICKQPMELLARRDFKRLATLTRSSEELVRSALQVIARLEPKPGRRFVD
VERNVIVPDVIVTKTGRGTNVKFRVMLNPDVMPRLRVHDIYAGALKSHKGEGSQALSQRLQEARWFIKNIQQRFDTILRV
SNAIVERQKSYFVHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTVELKYFFGSALGTETGGNASSTAVRAL
IKQFVGSESVKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRKAL

Nucleotide


Download         Length: 1602 bp        

>NTDB_id=1007887 ABL839_RS03115 WP_019655630.1 675205..676806(+) (rpoN/rpoN1) [Variovorax paradoxus strain 110B]
ATGAAGCAGGGGTTGTCCCTTCGCGTTTCGCAGCACCTGGCGCTCACGCCGCAGCTGCAGCAGTCGATCAGGCTGCTCCA
ACTCTCCACGCTCGAGCTGAGCCAGGAAGTGGAGCAGATGCTCGACGAGAACCCGTTCCTGGAGCGCACCGCCGAGGAGG
CCGTGCGCGAGGAATTCGGGCTCGACACCGCCGACGCGCCGGTCCCTCGAGATGACGGCGGCGATGGCACCGACGGCGAG
GGCGACTTCGCCCCCTCGGCCGCGAGCAGCAGCAGCGCGACTTCTTCCACGGAAGGCACGGCAGTCGCCGACGCCGACGG
CCCCGCCGCCGAGATCGCCGAGCGCGAGCCCGACTGGGAAGGCGACGGCACCGTCGACATGGCGCCCGACGACAGCGAAT
GGGGCAGCGACGCGCCCGCGCGCCAGAACAACGCCGGCGACGACGAGCGCGCAGATGCCACCGAGCTCGCGCGCAGCCAG
GAGTCGCTGCAGTCCTTCCTGCACCGCCAGGCACTGAGCCTGCGGCTCAACGAGAGCGACAGCGCCGCGCTGCGCTTCCT
CATCGAATCGCTCAACGAGGATGGCTACCTCGAAGACTCGCTGCCCGCGCTGGCCTCGGGCCTGGCGGGCGACGACAACG
ACGAATTCGACGACCTCGTGCACCACTTCCAGGTAGCGCTGGGCCTGCTGCAGAGCCTGGAGCCTGCCGGCGTCGGCGCG
CGCGACCTCGGCGAATGCCTGAGCATCCAGCTGCGCGCCATGGCGAGCGACGACGAGACCGAGGAAGAGGAACTGGTCCG
CAAGACGGCGCTGGCCATCTGCAAGCAGCCCATGGAGCTGCTCGCGCGCCGCGACTTCAAGCGCCTGGCCACGCTCACCC
GCAGCAGCGAGGAGCTGGTGCGCTCGGCGCTGCAGGTCATCGCGCGGCTGGAGCCCAAGCCGGGCCGGCGCTTCGTCGAC
GTGGAGCGCAACGTCATCGTGCCCGACGTGATCGTCACCAAGACCGGCCGCGGCACCAACGTGAAGTTCCGCGTGATGCT
CAACCCCGACGTGATGCCGCGCCTGCGCGTGCACGACATCTATGCCGGCGCGCTGAAGTCGCACAAGGGCGAGGGCAGCC
AGGCGCTGTCGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCCTGCGCGTG
AGCAACGCCATCGTCGAGCGGCAGAAGAGCTACTTCGTGCACGGCGAACTCGCCATGCGCCCGCTGGTGCTGCGCGAGAT
CGCCGACGAGCTGGGCCTGCACGAATCGACCATCTCGCGCGTGACCACCGCCAAGTACATGGCCACGCCCTTCGGCACGG
TCGAGCTCAAGTACTTCTTCGGCTCGGCGCTCGGCACCGAGACCGGCGGCAACGCGTCGAGCACCGCGGTGCGCGCGCTC
ATCAAGCAGTTCGTCGGCTCCGAGAGCGTGAAGAAGCCGCTGTCGGACAGCCAGATCTCCGAGATGCTGAAGGAGCAGGG
CATCGAGTGCGCGCGCCGCACCGTCGCCAAGTACCGCGAGGCGCTGCGCATCGCGCCCGCCAACCTGCGCAAAGCCTTGT
AA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(375-531)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(154-361)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.523

100

0.527

Multiple sequence alignment