Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABL842_RS22855 Genome accession   NZ_CP157630
Coordinates   4804866..4805264 (-) Length   132 a.a.
NCBI ID   WP_015867390.1    Uniprot ID   A0A3P3EQ97
Organism   Variovorax paradoxus strain 349MFTsu5.1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4799866..4810264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL842_RS22840 (ABL842_22825) - 4801592..4803904 (-) 2313 WP_015867387.1 methyl-accepting chemotaxis protein -
  ABL842_RS22845 (ABL842_22830) - 4803947..4804480 (-) 534 WP_015867388.1 chemotaxis protein CheW -
  ABL842_RS22850 (ABL842_22835) - 4804500..4804865 (-) 366 WP_015867389.1 response regulator -
  ABL842_RS22855 (ABL842_22840) pilG 4804866..4805264 (-) 399 WP_015867390.1 response regulator Regulator
  ABL842_RS22860 (ABL842_22845) - 4805347..4805517 (-) 171 WP_007838397.1 rubredoxin -
  ABL842_RS22865 (ABL842_22850) thiD 4805629..4806594 (+) 966 WP_015867391.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ABL842_RS22870 (ABL842_22855) hemL 4806594..4807889 (+) 1296 WP_015867392.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ABL842_RS22875 (ABL842_22860) purH 4807938..4809545 (-) 1608 WP_015867393.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  ABL842_RS22880 (ABL842_22865) - 4809566..4809802 (-) 237 WP_007838304.1 Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14708.85 Da        Isoelectric Point: 7.3215

>NTDB_id=1007859 ABL842_RS22855 WP_015867390.1 4804866..4805264(-) (pilG) [Variovorax paradoxus strain 349MFTsu5.1]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGTLQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1007859 ABL842_RS22855 WP_015867390.1 4804866..4805264(-) (pilG) [Variovorax paradoxus strain 349MFTsu5.1]
ATGGGGCCGAATGGATCAGGTTACAAGGTGCTCGTCATCGACGACAGCAATACGATCCGGCGCAGTGCCGAAATATTTCT
GAAGCAGGGCGGGCACGAGGTTCTTCTCGCGGAAGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCGCATC
TGATTTTCTGCGACATCCTGATGCCGCGGCTGGACGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCTCATTTCTCC
AATGTTCCGGTCGTGATGCTCTCCTCGAAAGACGGCGTCTTCGACAAGGCGCGCGGCCGCATGGTCGGGTCGCAGGACTA
CCTGACCAAACCCTTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCACCCTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P3EQ97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment