Detailed information NTG1007858

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABL842_RS21675
• Genome accession: NZ_CP157630
• Coordinates: 4552152..4553393 (+)
• Length: 413 a.a.
• NCBI ID: WP_418146025.1
• Uniprot ID: -
• Organism: Variovorax paradoxus strain 349MFTsu5.1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4547152..4558393

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABL842_RS21655 (ABL842_21640)	-	4547642..4548277 (-)	636	WP_015867140.1	LysE/ArgO family amino acid transporter	-
ABL842_RS21660 (ABL842_21645)	-	4548359..4549276 (+)	918	WP_418146019.1	LysR family transcriptional regulator ArgP	-
ABL842_RS21665 (ABL842_21650)	-	4549301..4550647 (-)	1347	WP_418146021.1	M16 family metallopeptidase	-
ABL842_RS21670 (ABL842_21655)	-	4550665..4552122 (-)	1458	WP_418146023.1	M16 family metallopeptidase	-
ABL842_RS21675 (ABL842_21660)	pilA	4552152..4553393 (+)	1242	WP_418146025.1	signal recognition particle-docking protein FtsY	Machinery gene
ABL842_RS21680 (ABL842_21665)	-	4553418..4554455 (-)	1038	WP_418146026.1	hypothetical protein	-
ABL842_RS21685 (ABL842_21670)	-	4554605..4556383 (-)	1779	WP_418146027.1	ATP-binding protein	-
ABL842_RS21690 (ABL842_21675)	-	4556394..4557107 (-)	714	WP_062366006.1	response regulator	-
ABL842_RS21695 (ABL842_21680)	-	4557275..4557739 (+)	465	WP_418146028.1	DUF962 domain-containing protein	-

Sequence

Protein

• Length: 413 a.a.
• Molecular weight: 42806.39 Da
• Isoelectric Point: 5.3229

>NTDB_id=1007858 ABL842_RS21675 WP_418146025.1 4552152..4553393(+) (pilA) [Variovorax paradoxus strain 349MFTsu5.1]
MFSFFKKKPPAESPAAPAPSPAAEPAPAPEPAPAPAAAPARSVFSPSSWFGSKPAAEEAAPPPAAPDTAPPVVPPPPPPA
AANLAPVPAAPAPAPAVPAVPPPPPALVEAAMPAERKGWFDKLKTGLRKTGTGIQAVFVNAQIDEALYEELESALLMADA
GVKATEYLLDDLRGRVKRQMATDAAQVKRLLADAITDLLQPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKLTKHLASE
GASVLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVTAGKARGKDVVLVDTAGRLPTQLHLMDELKKIK
RVVTKADATAPHEVLLVIDGNTGQNALAQVRAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLE
TFNAREFALALLG

Nucleotide

• Length: 1242 bp

>NTDB_id=1007858 ABL842_RS21675 WP_418146025.1 4552152..4553393(+) (pilA) [Variovorax paradoxus strain 349MFTsu5.1]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAATCCCCGGCCGCGCCGGCGCCCTCACCGGCCGCCGAGCCGGCCCC
TGCGCCCGAACCCGCGCCTGCGCCCGCTGCCGCACCCGCGCGTTCGGTGTTCTCTCCGTCGAGCTGGTTCGGTTCGAAGC
CTGCCGCGGAGGAAGCGGCGCCTCCGCCTGCAGCCCCAGACACGGCGCCCCCGGTTGTGCCTCCTCCGCCGCCACCCGCG
GCCGCGAACCTCGCCCCTGTGCCTGCAGCACCGGCGCCCGCGCCTGCCGTTCCGGCCGTGCCCCCGCCCCCACCCGCCCT
CGTCGAGGCCGCCATGCCCGCCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGACCGGCCTGCGCAAGACCGGCACCGGCA
TCCAGGCCGTGTTCGTCAACGCGCAGATCGACGAAGCGCTGTACGAGGAGCTCGAATCGGCCCTGCTGATGGCCGATGCC
GGCGTCAAGGCCACCGAATACCTGCTCGACGACCTGCGCGGCCGCGTCAAGCGCCAGATGGCGACCGATGCGGCGCAAGT
GAAGCGGCTGCTGGCCGATGCCATCACCGACCTGCTCCAGCCGCTCGAGAAGCCGCTGGTGATCGGCCAGTTCACGCCGA
CGGTGATCATGGTGGCGGGCGTCAACGGCGCCGGCAAGACCACCTCGATCGGCAAGCTCACCAAGCACCTGGCCAGCGAA
GGCGCCTCGGTGCTGCTGGCCGCGGCCGACACCTTCCGCGCGGCGGCGCGCGAGCAGCTGCTGGTCTGGGCCGACCGCAA
CACGGTCGAGATCGTGAGCCAGGAAGGCGGCGACCCGTCGGCCGTGAGCTTCGACGCAGTCACGGCCGGCAAGGCGCGCG
GCAAGGACGTGGTGCTGGTCGACACCGCCGGCCGGCTGCCGACGCAGTTGCACCTGATGGACGAGCTCAAGAAGATCAAG
CGCGTCGTCACCAAGGCCGACGCCACCGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGGCAGAACGCCCT
GGCGCAGGTCCGGGCCTTCGACGAGACGCTGGGCCTCACCGGCCTGGTGGTGACCAAGCTCGACGGCACCGCCAAGGGTG
GCGTGCTCTGCGCCATTGCGCGCGAGCGGCCGATCCCGGTCTACTTCATCGGCGTGGGCGAGAAGCTGGAAGACCTCGAG
ACCTTCAACGCGCGCGAGTTCGCGCTGGCGCTGCTGGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (131-194)

• SRP54-type protein, GTPase domain (SRP54) (213-412)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.412	100	0.508