Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABL837_RS02330 Genome accession   NZ_CP157626
Coordinates   508556..510148 (+) Length   530 a.a.
NCBI ID   WP_062363710.1    Uniprot ID   -
Organism   Variovorax paradoxus NBRC 15149     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 503556..515148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL837_RS02305 (ABL837_02305) argS 503617..505302 (+) 1686 WP_062363717.1 arginine--tRNA ligase -
  ABL837_RS02310 (ABL837_02310) - 505310..506041 (+) 732 WP_062363714.1 SPOR domain-containing protein -
  ABL837_RS02315 (ABL837_02315) - 506186..506833 (+) 648 WP_062363712.1 thiol:disulfide interchange protein DsbA/DsbL -
  ABL837_RS02320 (ABL837_02320) lptA 507028..507747 (+) 720 WP_018904014.1 lipopolysaccharide transport periplasmic protein LptA -
  ABL837_RS02325 (ABL837_02325) lptB 507744..508538 (+) 795 WP_018904015.1 LPS export ABC transporter ATP-binding protein -
  ABL837_RS02330 (ABL837_02330) rpoN/rpoN1 508556..510148 (+) 1593 WP_062363710.1 RNA polymerase factor sigma-54 Machinery gene
  ABL837_RS02335 (ABL837_02335) - 510159..511763 (+) 1605 WP_062363707.1 phospholipase D family protein -
  ABL837_RS02340 (ABL837_02340) - 511774..512421 (-) 648 WP_062363705.1 LysE family translocator -
  ABL837_RS02345 (ABL837_02345) - 512426..513061 (-) 636 WP_062363702.1 YceI family protein -
  ABL837_RS02350 (ABL837_02350) - 513102..513683 (-) 582 WP_062363699.1 YceI family protein -
  ABL837_RS02355 (ABL837_02355) - 513680..514309 (-) 630 WP_062363696.1 cytochrome b -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58466.80 Da        Isoelectric Point: 4.7249

>NTDB_id=1007813 ABL837_RS02330 WP_062363710.1 508556..510148(+) (rpoN/rpoN1) [Variovorax paradoxus NBRC 15149]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAAREEFGLDAIDTPVPRDEAGEAAEGE
FSSAPASSATATSSETASTAESEVPAADATEREPDWEGDGTVDMAPDDSEWGSDAPARQNNLGDDERADATELARSQESL
QSFLHRQALSLRLNENDSAALRFLIESLNDDGYLEDSLPALASGLAGDDNDQFDELVHHFQVALGLLQSLEPAGVGARDL
GECLCIQLRALASESETEEQALVRKTAIAICKQPMELLARRDFKRLATLTRTNEELVRSALQVISRLEPKPGRRFVDVER
NIVIPDVIVTKIGRGTNAKFRVMLNPEVMPRLRVHDIYAGALKSHKGEGSQALSQRLQEARWFIKNIQQRFDTILRVSNA
IVERQKSFFVHGELAMRPLVLREIADELGLHESTISRVTTAKYMSTPFGTVELKYFFGSALGTETGGNASSTAVRALIKQ
FVSSESIKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRKAL

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=1007813 ABL837_RS02330 WP_062363710.1 508556..510148(+) (rpoN/rpoN1) [Variovorax paradoxus NBRC 15149]
ATGAAGCAAGGGCTGTCCCTTCGCGTTTCGCAGCACCTGGCGCTCACGCCCCAGCTGCAGCAGTCGATCCGGCTGCTGCA
GCTGTCCACGCTCGAACTGAGCCAGGAAGTGGAGCAGATGCTGGACGAGAACCCGTTCCTCGAACGCACCGCGGAAGAAG
CCGCGCGCGAGGAATTCGGGCTCGACGCCATCGACACGCCGGTGCCGCGCGACGAGGCCGGTGAAGCCGCCGAGGGCGAA
TTCAGCTCGGCCCCGGCCAGCAGCGCGACCGCCACGTCCAGCGAAACCGCCTCCACGGCCGAGTCCGAGGTTCCCGCCGC
CGACGCCACCGAGCGCGAGCCCGACTGGGAAGGCGACGGCACCGTCGACATGGCGCCCGACGACAGCGAATGGGGCAGCG
ATGCCCCCGCGCGCCAGAACAACCTGGGCGACGACGAGCGCGCCGACGCCACCGAGCTCGCGCGCAGCCAGGAGTCGCTG
CAGTCCTTCCTGCACCGGCAGGCGCTGAGCCTGCGGCTGAACGAGAACGACAGCGCCGCGCTGCGCTTCCTGATCGAATC
GCTCAACGACGACGGCTACCTGGAGGATTCGCTGCCGGCGCTGGCCTCGGGCCTCGCGGGCGACGACAACGACCAGTTCG
ACGAGCTGGTGCACCACTTCCAGGTGGCGCTCGGCCTGCTGCAGAGCCTGGAGCCGGCCGGCGTCGGCGCGCGCGACCTG
GGCGAATGCCTTTGCATCCAGCTGCGCGCGCTCGCCAGCGAAAGCGAGACCGAGGAACAGGCGCTGGTGCGCAAGACCGC
CATCGCGATCTGCAAGCAGCCGATGGAGCTGCTCGCGCGGCGCGACTTCAAGCGCCTGGCCACGCTCACGCGCACCAACG
AAGAGCTGGTGCGCTCGGCGCTGCAGGTCATCTCGCGCCTGGAGCCCAAGCCGGGCCGCCGCTTCGTCGACGTCGAGCGC
AACATCGTCATTCCCGACGTGATCGTCACCAAGATCGGCCGCGGCACCAATGCCAAGTTCCGCGTCATGCTCAATCCCGA
GGTGATGCCGCGGCTGCGCGTGCACGACATCTATGCAGGCGCGCTCAAGTCGCACAAGGGCGAGGGCAGCCAGGCGCTGT
CGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCCTGCGCGTGAGCAACGCC
ATCGTCGAGCGGCAGAAGAGCTTTTTCGTGCACGGCGAGCTCGCGATGCGGCCGCTGGTGCTGCGCGAGATTGCCGACGA
ACTGGGCCTGCACGAATCGACCATCTCGCGCGTGACGACGGCCAAGTACATGTCCACGCCTTTCGGCACGGTCGAGCTCA
AGTACTTCTTCGGCTCGGCGCTGGGCACCGAGACCGGCGGCAATGCGTCGAGCACCGCGGTGCGCGCGCTGATCAAGCAG
TTCGTGAGCTCCGAGAGCATCAAGAAGCCGCTGTCCGACAGCCAGATCTCCGAGATGCTCAAGGAGCAGGGCATCGAGTG
CGCGCGCCGCACCGTGGCCAAGTACCGCGAGGCCCTGCGCATCGCGCCCGCCAACCTCCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(151-358)

Sigma-54, DNA binding domain (Sigma54_DBD)

(372-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.977

100

0.521

Multiple sequence alignment