Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABL838_RS27140 Genome accession   NZ_CP157624
Coordinates   5897870..5898268 (-) Length   132 a.a.
NCBI ID   WP_093205631.1    Uniprot ID   -
Organism   Variovorax sp. 160MFSha2.1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5892870..5903268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL838_RS27125 (ABL838_27090) - 5894600..5896909 (-) 2310 WP_126023625.1 methyl-accepting chemotaxis protein -
  ABL838_RS27130 (ABL838_27095) - 5896952..5897485 (-) 534 WP_126023626.1 chemotaxis protein CheW -
  ABL838_RS27135 (ABL838_27100) - 5897505..5897870 (-) 366 WP_093304503.1 response regulator -
  ABL838_RS27140 (ABL838_27105) pilG 5897870..5898268 (-) 399 WP_093205631.1 response regulator Regulator
  ABL838_RS27145 (ABL838_27110) - 5898353..5898523 (-) 171 WP_007838397.1 rubredoxin -
  ABL838_RS27150 (ABL838_27115) thiD 5898635..5899597 (+) 963 WP_126023627.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ABL838_RS27155 (ABL838_27120) hemL 5899699..5900985 (+) 1287 WP_418122760.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ABL838_RS27160 (ABL838_27125) - 5900989..5901474 (+) 486 WP_418122761.1 hypothetical protein -
  ABL838_RS27165 (ABL838_27130) purH 5901554..5903161 (-) 1608 WP_418122762.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14694.82 Da        Isoelectric Point: 7.3215

>NTDB_id=1007804 ABL838_RS27140 WP_093205631.1 5897870..5898268(-) (pilG) [Variovorax sp. 160MFSha2.1]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGTVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1007804 ABL838_RS27140 WP_093205631.1 5897870..5898268(-) (pilG) [Variovorax sp. 160MFSha2.1]
ATGGGCCCGAATGGATCTGGTTACAAGGTGCTTGTCATTGACGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTCT
GAAGCAGGGTGGGCACGAGGTTCTTCTCGCCGAAGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCGCATC
TGATTTTCTGCGACATCCTGATGCCGCGCCTGGACGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCCCACTTTTCC
AACGTCCCGGTCGTCATGCTGTCGTCGAAAGACGGTGTATTCGACAAGGCACGCGGCCGCATGGTCGGTTCCCAGGACTA
CCTGACCAAGCCTTTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCACCGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment