Detailed information NTG1007803

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABL838_RS26205
• Genome accession: NZ_CP157624
• Coordinates: 5696852..5698084 (+)
• Length: 410 a.a.
• NCBI ID: WP_418122633.1
• Uniprot ID: -
• Organism: Variovorax sp. 160MFSha2.1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5691852..5703084

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABL838_RS26185 (ABL838_26150)	-	5692343..5692981 (-)	639	WP_184640691.1	LysE/ArgO family amino acid transporter	-
ABL838_RS26190 (ABL838_26155)	-	5693070..5693987 (+)	918	WP_418122630.1	LysR family transcriptional regulator ArgP	-
ABL838_RS26195 (ABL838_26160)	-	5693988..5695364 (-)	1377	WP_418122632.1	M16 family metallopeptidase	-
ABL838_RS26200 (ABL838_26165)	-	5695380..5696774 (-)	1395	WP_418125914.1	M16 family metallopeptidase	-
ABL838_RS26205 (ABL838_26170)	pilA	5696852..5698084 (+)	1233	WP_418122633.1	signal recognition particle-docking protein FtsY	Machinery gene
ABL838_RS26210 (ABL838_26175)	-	5698308..5700116 (-)	1809	WP_418122635.1	hybrid sensor histidine kinase/response regulator	-
ABL838_RS26215 (ABL838_26180)	-	5700113..5700844 (-)	732	WP_418122637.1	response regulator transcription factor	-
ABL838_RS26220 (ABL838_26185)	-	5701030..5701494 (+)	465	WP_126025549.1	DUF962 domain-containing protein	-
ABL838_RS26225 (ABL838_26190)	rpoH	5701593..5702534 (+)	942	WP_126025550.1	RNA polymerase sigma factor RpoH	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 42610.97 Da
• Isoelectric Point: 5.3372

>NTDB_id=1007803 ABL838_RS26205 WP_418122633.1 5696852..5698084(+) (pilA) [Variovorax sp. 160MFSha2.1]
MFSFFKKKPSAEAPDAPAPTPPAPAAPAPEPAPARSVFSPSSWFGSKPAAEETPAPAPVTTPASVPVPSPAPAPAATPVV
PSSPAPAPSATPAPAPTPVAAAPVAEPVIATERKGWFDKLKTGLRKTGTGIQAVFVNAKIDEELYEELESALLMADTGVK
ATEYLLEDLRGRVKRQMATDASQVKALLAETVADLLKPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKLTKHLADEGAS
VLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVNAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKRVV
TKADGTAPHEVLLVIDGNTGQNALAQVKAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLETFN
AREFAQALLG

Nucleotide

• Length: 1233 bp

>NTDB_id=1007803 ABL838_RS26205 WP_418122633.1 5696852..5698084(+) (pilA) [Variovorax sp. 160MFSha2.1]
ATGTTCAGTTTCTTCAAGAAAAAACCGTCTGCCGAGGCCCCCGACGCGCCGGCGCCCACCCCGCCGGCCCCGGCGGCGCC
TGCCCCGGAGCCCGCGCCCGCACGCTCGGTGTTTTCGCCTTCGAGCTGGTTCGGCTCGAAGCCGGCGGCGGAAGAAACGC
CGGCGCCCGCACCCGTCACCACGCCAGCGTCCGTACCGGTTCCCTCCCCCGCTCCCGCACCGGCCGCTACACCGGTCGTG
CCATCCTCCCCGGCCCCCGCTCCTTCCGCCACGCCTGCGCCCGCGCCGACTCCGGTGGCCGCCGCGCCGGTTGCCGAACC
CGTGATCGCCACCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGACCGGCCTGCGCAAGACCGGCACCGGCATCCAGGCCG
TGTTCGTCAATGCGAAGATCGACGAAGAGCTCTACGAGGAGCTCGAATCCGCCCTGCTGATGGCCGACACCGGCGTCAAG
GCGACCGAATACCTGCTCGAAGACCTGCGCGGCCGCGTGAAGCGCCAGATGGCCACCGATGCTTCGCAGGTCAAGGCACT
GCTGGCCGAGACAGTGGCCGACCTGCTGAAGCCGCTCGAGAAGCCGCTGGTCATCGGCCAGTTCACGCCCACCGTGATCA
TGGTGGCCGGCGTCAACGGCGCGGGCAAGACCACCTCCATCGGCAAGCTCACCAAGCACCTGGCCGACGAAGGCGCCTCG
GTGCTGCTGGCGGCGGCCGACACCTTCCGGGCGGCGGCGCGCGAGCAACTGCTGGTCTGGGCCGACCGCAACACCGTCGA
GATCGTGAGCCAGGAAGGCGGCGATCCGTCGGCCGTGAGCTTCGACGCGGTGAACGCCGGCAAGGCGCGCGGCAAGGACG
TTGTGCTGGTCGACACGGCCGGCCGCTTGCCGACGCAGCTGCACCTGATGGACGAGCTCAAGAAGATCAAGCGCGTCGTC
ACCAAGGCCGACGGCACCGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGCCAGAACGCGCTGGCGCAGGT
CAAGGCCTTCGACGAAACGCTGGGCCTCACCGGCCTGGTCGTGACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGT
GCGCCATCGCGCGGGAGAGGCCGATTCCGGTCTACTTCATCGGTGTGGGCGAGAAGCTGGAAGACCTGGAAACCTTCAAC
GCCCGCGAGTTCGCGCAGGCGCTGCTCGGATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (210-410)

• SRP54-type protein, helical bundle domain (SRP54_N) (128-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.645	100	0.512