Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QUD80_RS13185 Genome accession   NZ_AP027302
Coordinates   2762975..2764648 (-) Length   557 a.a.
NCBI ID   WP_174113994.1    Uniprot ID   -
Organism   Enterococcus faecalis strain N4E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2757975..2769648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD80_RS13155 (N4E_25730) ftsL 2758989..2759396 (-) 408 WP_002358883.1 cell division protein FtsL -
  QUD80_RS13160 (N4E_25740) rsmH 2759413..2760369 (-) 957 WP_165483260.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  QUD80_RS13165 (N4E_25750) mraZ 2760384..2760869 (-) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  QUD80_RS13170 - 2761103..2761495 (-) 393 WP_002383401.1 DUF3397 domain-containing protein -
  QUD80_RS13175 (N4E_25760) - 2761740..2762705 (+) 966 WP_002402987.1 magnesium transporter CorA family protein -
  QUD80_RS13180 - 2762773..2762883 (+) 111 WP_002383399.1 DUF4044 domain-containing protein -
  QUD80_RS13185 (N4E_25770) recN 2762975..2764648 (-) 1674 WP_174113994.1 DNA repair protein RecN Machinery gene
  QUD80_RS13190 (N4E_25780) - 2764666..2765115 (-) 450 WP_002358881.1 ArgR family transcriptional regulator -
  QUD80_RS13195 (N4E_25790) - 2765247..2766107 (-) 861 WP_248848910.1 hypothetical protein -
  QUD80_RS13200 (N4E_25800) - 2766112..2766669 (-) 558 WP_002361405.1 matrixin family metalloprotease -
  QUD80_RS13205 (N4E_25810) - 2767035..2767850 (-) 816 WP_002364633.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  QUD80_RS13210 (N4E_25820) - 2767864..2768745 (-) 882 WP_002355879.1 polyprenyl synthetase family protein -
  QUD80_RS13215 (N4E_25830) - 2768745..2768975 (-) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62629.12 Da        Isoelectric Point: 4.6236

>NTDB_id=100780 QUD80_RS13185 WP_174113994.1 2762975..2764648(-) (recN) [Enterococcus faecalis strain N4E]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKKLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTRAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALVLRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSAITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=100780 QUD80_RS13185 WP_174113994.1 2762975..2764648(-) (recN) [Enterococcus faecalis strain N4E]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGATT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGAAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACGGGCATATCAAGAGTATCGCGCACTCGAAGCTAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCCCAGTTGGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGACGAAGGTCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCCGCTCATCAACAAGCGTTAGTTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTTGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGCTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTAGATACAGGAGTTAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATAACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGCCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGCAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.993

100

0.494

Multiple sequence alignment