Detailed information NTG1007785

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABL844_RS26695
• Genome accession: NZ_CP157622
• Coordinates: 5745402..5746643 (+)
• Length: 413 a.a.
• NCBI ID: WP_418129582.1
• Uniprot ID: -
• Organism: Variovorax sp. 278MFTsu5.1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5740402..5751643

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABL844_RS26675 (ABL844_26645)	-	5740893..5741531 (-)	639	WP_184640691.1	LysE/ArgO family amino acid transporter	-
ABL844_RS26680 (ABL844_26650)	-	5741620..5742537 (+)	918	WP_418129579.1	LysR family transcriptional regulator ArgP	-
ABL844_RS26685 (ABL844_26655)	-	5742538..5743914 (-)	1377	WP_418129580.1	M16 family metallopeptidase	-
ABL844_RS26690 (ABL844_26660)	-	5743930..5745372 (-)	1443	WP_418129581.1	M16 family metallopeptidase	-
ABL844_RS26695 (ABL844_26665)	pilA	5745402..5746643 (+)	1242	WP_418129582.1	signal recognition particle-docking protein FtsY	Machinery gene
ABL844_RS26700 (ABL844_26670)	-	5746867..5748675 (-)	1809	WP_418129583.1	hybrid sensor histidine kinase/response regulator	-
ABL844_RS26705 (ABL844_26675)	-	5748672..5749403 (-)	732	WP_126025548.1	response regulator transcription factor	-
ABL844_RS26710 (ABL844_26680)	-	5749589..5750053 (+)	465	WP_126025549.1	DUF962 domain-containing protein	-
ABL844_RS26715 (ABL844_26685)	rpoH	5750152..5751093 (+)	942	WP_126025550.1	RNA polymerase sigma factor RpoH	-

Sequence

Protein

• Length: 413 a.a.
• Molecular weight: 42938.40 Da
• Isoelectric Point: 5.3336

>NTDB_id=1007785 ABL844_RS26695 WP_418129582.1 5745402..5746643(+) (pilA) [Variovorax sp. 278MFTsu5.1]
MFSFFKKKPPAEAPDAPAPTPPTPPTPAAPAPEPAPARSVFSPSSWFGSKPAAEETPAPAPVTAPASVPVPSPAPAPVAA
PVVPPSPAPAPSATPAPAPTPVAAAPVAEPVIATERKGWFDKLKTGLRKTGTGIQAVFVNAKIDEELYEELESALLMADT
GVKATEYLLDDLRGRVKRQMATDASQVKALLAETVADLLKPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKLTKHLADE
GASVLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVNAGRARGKDVVLVDTAGRLPTQLHLMDELKKIK
RVVTKADGTAPHEVLLVIDGNTGQNALAQVKAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLE
TFNAREFAQALLG

Nucleotide

• Length: 1242 bp

>NTDB_id=1007785 ABL844_RS26695 WP_418129582.1 5745402..5746643(+) (pilA) [Variovorax sp. 278MFTsu5.1]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAGGCCCCCGACGCGCCGGCGCCCACCCCGCCCACCCCGCCGACCCC
GGCGGCGCCTGCCCCGGAGCCCGCGCCCGCACGCTCGGTGTTTTCGCCTTCGAGCTGGTTCGGCTCGAAGCCGGCGGCGG
AAGAAACGCCGGCGCCCGCACCCGTCACCGCGCCAGCGTCCGTACCGGTTCCCTCCCCCGCTCCCGCACCGGTCGCTGCC
CCGGTCGTGCCACCCTCCCCGGCCCCCGCTCCTTCCGCAACGCCTGCGCCCGCGCCGACTCCGGTGGCCGCCGCGCCGGT
TGCCGAACCCGTGATCGCCACCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGACCGGCCTGCGCAAGACTGGCACCGGCA
TCCAGGCCGTGTTCGTCAACGCGAAGATCGACGAAGAGCTCTACGAGGAGCTCGAATCCGCCCTGCTGATGGCCGACACC
GGCGTCAAGGCCACCGAATACCTGCTCGACGACCTGCGCGGCCGCGTGAAGCGCCAGATGGCCACCGATGCCTCGCAGGT
CAAGGCACTGCTGGCCGAGACGGTGGCCGACCTGCTGAAGCCGCTCGAGAAGCCGCTGGTGATCGGCCAGTTCACGCCCA
CCGTGATCATGGTGGCCGGCGTCAACGGCGCGGGCAAGACCACCTCCATCGGCAAGCTCACCAAGCACCTGGCCGACGAA
GGCGCCTCGGTGCTGCTGGCCGCCGCCGACACCTTCCGGGCGGCGGCGCGCGAGCAGCTGCTGGTCTGGGCCGACCGCAA
TACCGTCGAGATCGTGAGCCAGGAAGGCGGCGACCCGTCGGCCGTGAGCTTCGACGCGGTGAACGCCGGCCGGGCCCGCG
GCAAGGACGTGGTGCTGGTCGACACGGCCGGGCGCCTGCCGACGCAGCTGCACCTGATGGACGAGCTCAAGAAGATCAAG
CGCGTCGTCACCAAGGCCGACGGCACCGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGCCAGAACGCGCT
GGCGCAGGTCAAGGCTTTCGACGAGACGCTGGGCCTCACGGGCCTGGTCGTGACCAAGCTCGACGGCACGGCCAAGGGCG
GCGTGCTGTGCGCCATCGCGCGGGAAAGGCCGATCCCGGTCTACTTCATCGGCGTGGGCGAGAAGCTGGAAGACCTGGAA
ACCTTCAACGCCCGCGAGTTCGCGCAGGCGCTGCTCGGATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (213-413)

• SRP54-type protein, helical bundle domain (SRP54_N) (131-193)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.883	100	0.516