Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABL843_RS26980 Genome accession   NZ_CP157620
Coordinates   5948027..5948425 (-) Length   132 a.a.
NCBI ID   WP_093205631.1    Uniprot ID   -
Organism   Variovorax sp. 350MFTsu5.1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5943027..5953425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL843_RS26965 (ABL843_26960) - 5944757..5947066 (-) 2310 WP_418117950.1 methyl-accepting chemotaxis protein -
  ABL843_RS26970 (ABL843_26965) - 5947109..5947642 (-) 534 WP_126023626.1 chemotaxis protein CheW -
  ABL843_RS26975 (ABL843_26970) - 5947662..5948027 (-) 366 WP_093304503.1 response regulator -
  ABL843_RS26980 (ABL843_26975) pilG 5948027..5948425 (-) 399 WP_093205631.1 response regulator Regulator
  ABL843_RS26985 (ABL843_26980) - 5948510..5948680 (-) 171 WP_007838397.1 rubredoxin -
  ABL843_RS26990 (ABL843_26985) thiD 5948792..5949754 (+) 963 WP_126023627.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ABL843_RS26995 (ABL843_26990) hemL 5949857..5951143 (+) 1287 WP_418117951.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ABL843_RS27000 (ABL843_26995) - 5951149..5951634 (+) 486 WP_126023629.1 hypothetical protein -
  ABL843_RS27005 (ABL843_27000) purH 5951733..5953340 (-) 1608 WP_418117952.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14694.82 Da        Isoelectric Point: 7.3215

>NTDB_id=1007766 ABL843_RS26980 WP_093205631.1 5948027..5948425(-) (pilG) [Variovorax sp. 350MFTsu5.1]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGTVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1007766 ABL843_RS26980 WP_093205631.1 5948027..5948425(-) (pilG) [Variovorax sp. 350MFTsu5.1]
ATGGGCCCGAATGGATCTGGTTACAAGGTGCTTGTCATCGACGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTCT
GAAGCAGGGTGGGCACGAGGTTCTTCTCGCCGAAGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCGCATC
TGATTTTCTGCGACATCCTGATGCCGCGCCTGGACGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCCCACTTTTCC
AACGTCCCGGTCGTCATGCTGTCGTCGAAAGACGGTGTATTCGACAAGGCACGCGGCCGCATGGTCGGTTCCCAGGACTA
CCTGACCAAGCCTTTCACCAAAGACCAACTGCTGCAGGCCGTGCAGCAGTTTGGCACCGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment