Detailed information NTG1007747

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABL849_RS26485
• Genome accession: NZ_CP157618
• Coordinates: 5778605..5779846 (+)
• Length: 413 a.a.
• NCBI ID: WP_418129582.1
• Uniprot ID: -
• Organism: Variovorax sp. 375MFSha3.1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5773605..5784846

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABL849_RS26465 (ABL849_26445)	-	5774096..5774734 (-)	639	WP_184640691.1	LysE/ArgO family amino acid transporter	-
ABL849_RS26470 (ABL849_26450)	-	5774823..5775740 (+)	918	WP_418129579.1	LysR family transcriptional regulator ArgP	-
ABL849_RS26475 (ABL849_26455)	-	5775741..5777117 (-)	1377	WP_418129580.1	M16 family metallopeptidase	-
ABL849_RS26480 (ABL849_26460)	-	5777133..5778575 (-)	1443	WP_418129581.1	M16 family metallopeptidase	-
ABL849_RS26485 (ABL849_26465)	pilA	5778605..5779846 (+)	1242	WP_418129582.1	signal recognition particle-docking protein FtsY	Machinery gene
ABL849_RS26490 (ABL849_26470)	-	5780070..5781878 (-)	1809	WP_418129583.1	hybrid sensor histidine kinase/response regulator	-
ABL849_RS26495 (ABL849_26475)	-	5781875..5782606 (-)	732	WP_126025548.1	response regulator transcription factor	-
ABL849_RS26500 (ABL849_26480)	-	5782792..5783256 (+)	465	WP_126025549.1	DUF962 domain-containing protein	-
ABL849_RS26505 (ABL849_26485)	rpoH	5783355..5784296 (+)	942	WP_126025550.1	RNA polymerase sigma factor RpoH	-

Sequence

Protein

• Length: 413 a.a.
• Molecular weight: 42938.40 Da
• Isoelectric Point: 5.3336

>NTDB_id=1007747 ABL849_RS26485 WP_418129582.1 5778605..5779846(+) (pilA) [Variovorax sp. 375MFSha3.1]
MFSFFKKKPPAEAPDAPAPTPPTPPTPAAPAPEPAPARSVFSPSSWFGSKPAAEETPAPAPVTAPASVPVPSPAPAPVAA
PVVPPSPAPAPSATPAPAPTPVAAAPVAEPVIATERKGWFDKLKTGLRKTGTGIQAVFVNAKIDEELYEELESALLMADT
GVKATEYLLDDLRGRVKRQMATDASQVKALLAETVADLLKPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKLTKHLADE
GASVLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVNAGRARGKDVVLVDTAGRLPTQLHLMDELKKIK
RVVTKADGTAPHEVLLVIDGNTGQNALAQVKAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLE
TFNAREFAQALLG

Nucleotide

• Length: 1242 bp

>NTDB_id=1007747 ABL849_RS26485 WP_418129582.1 5778605..5779846(+) (pilA) [Variovorax sp. 375MFSha3.1]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAGGCCCCCGACGCGCCGGCGCCCACCCCGCCCACCCCGCCGACCCC
GGCGGCGCCTGCCCCGGAGCCCGCGCCCGCACGCTCGGTGTTTTCGCCTTCGAGCTGGTTCGGCTCGAAGCCGGCGGCGG
AAGAAACGCCGGCGCCCGCACCCGTCACCGCGCCAGCGTCCGTACCGGTTCCCTCCCCCGCTCCCGCACCGGTCGCTGCC
CCGGTCGTGCCACCCTCCCCGGCCCCCGCTCCTTCCGCAACGCCTGCGCCCGCGCCGACTCCGGTGGCCGCCGCGCCGGT
TGCCGAACCCGTGATCGCCACCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGACCGGCCTGCGCAAGACTGGCACCGGCA
TCCAGGCCGTGTTCGTCAACGCGAAGATCGACGAAGAGCTCTACGAGGAGCTCGAATCCGCCCTGCTGATGGCCGACACC
GGCGTCAAGGCCACCGAATACCTGCTCGACGACCTGCGCGGCCGCGTGAAGCGCCAGATGGCCACCGATGCCTCGCAGGT
CAAGGCACTGCTGGCCGAGACGGTGGCCGACCTGCTGAAGCCGCTCGAGAAGCCGCTGGTGATCGGCCAGTTCACGCCCA
CCGTGATCATGGTGGCCGGCGTCAACGGCGCGGGCAAGACCACCTCCATCGGCAAGCTCACCAAGCACCTGGCCGACGAA
GGCGCCTCGGTGCTGCTGGCCGCCGCCGACACCTTCCGGGCGGCGGCGCGCGAGCAGCTGCTGGTCTGGGCCGACCGCAA
TACCGTCGAGATCGTGAGCCAGGAAGGCGGCGACCCGTCGGCCGTGAGCTTCGACGCGGTGAACGCCGGCCGGGCCCGCG
GCAAGGACGTGGTGCTGGTCGACACGGCCGGGCGCCTGCCGACGCAGCTGCACCTGATGGACGAGCTCAAGAAGATCAAG
CGCGTCGTCACCAAGGCCGACGGCACCGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGCCAGAACGCGCT
GGCGCAGGTCAAGGCTTTCGACGAGACGCTGGGCCTCACGGGCCTGGTCGTGACCAAGCTCGACGGCACGGCCAAGGGCG
GCGTGCTGTGCGCCATCGCGCGGGAAAGGCCGATCCCGGTCTACTTCATCGGCGTGGGCGAGAAGCTGGAAGACCTGGAA
ACCTTCAACGCCCGCGAGTTCGCGCAGGCGCTGCTCGGATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (213-413)

• SRP54-type protein, helical bundle domain (SRP54_N) (131-193)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.883	100	0.516