Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   H1C94_RS00035 Genome accession   NZ_LR778140
Coordinates   7610..8602 (-) Length   330 a.a.
NCBI ID   WP_000224455.1    Uniprot ID   -
Organism   Escherichia coli isolate SC406     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2610..13602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1C94_RS00025 yieP 5502..6194 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  H1C94_RS00030 mdtD 6217..7644 (+) 1428 WP_001280864.1 multidrug transporter subunit MdtD -
  H1C94_RS00035 cytR 7610..8602 (-) 993 WP_000224455.1 ribose operon transcriptional repressor RbsR Regulator
  H1C94_RS00040 rbsK 8606..9535 (-) 930 WP_001300603.1 ribokinase -
  H1C94_RS00045 rbsB 9661..10551 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  H1C94_RS00050 rbsC 10576..11541 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  H1C94_RS00055 rbsA 11546..13051 (-) 1506 WP_000387753.1 ribose ABC transporter ATP-binding protein RbsA -
  H1C94_RS00060 rbsD 13059..13478 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36570.85 Da        Isoelectric Point: 5.2141

>NTDB_id=1007678 H1C94_RS00035 WP_000224455.1 7610..8602(-) (cytR) [Escherichia coli isolate SC406]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAISAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1007678 H1C94_RS00035 WP_000224455.1 7610..8602(-) (cytR) [Escherichia coli isolate SC406]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTTCCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364