Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABL848_RS05990 Genome accession   NZ_CP157611
Coordinates   1289175..1289573 (-) Length   132 a.a.
NCBI ID   WP_093205631.1    Uniprot ID   -
Organism   Variovorax sp. NFACC28     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1284175..1294573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL848_RS05975 (ABL848_05975) - 1285917..1288226 (-) 2310 WP_093304501.1 methyl-accepting chemotaxis protein -
  ABL848_RS05980 (ABL848_05980) - 1288257..1288790 (-) 534 WP_056595423.1 chemotaxis protein CheW -
  ABL848_RS05985 (ABL848_05985) - 1288810..1289175 (-) 366 WP_093304503.1 response regulator -
  ABL848_RS05990 (ABL848_05990) pilG 1289175..1289573 (-) 399 WP_093205631.1 response regulator Regulator
  ABL848_RS05995 (ABL848_05995) - 1289658..1289828 (-) 171 WP_007838397.1 rubredoxin -
  ABL848_RS06000 (ABL848_06000) thiD 1289940..1290902 (+) 963 WP_093205634.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ABL848_RS06005 (ABL848_06005) hemL 1290902..1292182 (+) 1281 WP_093304505.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ABL848_RS06010 (ABL848_06010) - 1292186..1292671 (+) 486 WP_093205639.1 hypothetical protein -
  ABL848_RS06015 (ABL848_06015) purH 1292762..1294369 (-) 1608 WP_093304507.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14694.82 Da        Isoelectric Point: 7.3215

>NTDB_id=1007669 ABL848_RS05990 WP_093205631.1 1289175..1289573(-) (pilG) [Variovorax sp. NFACC28]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGTVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1007669 ABL848_RS05990 WP_093205631.1 1289175..1289573(-) (pilG) [Variovorax sp. NFACC28]
ATGGGCCCGAATGGATCTGGTTACAAGGTGCTGGTCATCGACGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTCT
GAAGCAGGGTGGGCACGAGGTTCTTCTCGCGGAAGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCGCATC
TGATTTTCTGCGACATCCTGATGCCGCGCCTCGACGGCTATCAGACTTGCGCCATCATCAAGCGCAACGCCCACTTTTCC
AACGTCCCGGTCGTCATGCTGTCGTCGAAAGACGGTGTATTCGACAAGGCACGCGGCCGCATGGTCGGTTCCCAGGACTA
CCTGACCAAGCCTTTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCACTGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment