Detailed information NTG1007668

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABL848_RS04955
• Genome accession: NZ_CP157611
• Coordinates: 1063585..1064841 (+)
• Length: 418 a.a.
• NCBI ID: WP_093304228.1
• Uniprot ID: -
• Organism: Variovorax sp. NFACC28
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1058585..1069841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABL848_RS04935 (ABL848_04930)	-	1058947..1059585 (-)	639	WP_093206687.1	LysE/ArgO family amino acid transporter	-
ABL848_RS04940 (ABL848_04935)	-	1059664..1060578 (+)	915	WP_093206686.1	LysR family transcriptional regulator ArgP	-
ABL848_RS04945 (ABL848_04940)	-	1060710..1062089 (-)	1380	WP_093304226.1	M16 family metallopeptidase	-
ABL848_RS04950 (ABL848_04945)	-	1062104..1063555 (-)	1452	WP_371287212.1	M16 family metallopeptidase	-
ABL848_RS04955 (ABL848_04950)	pilA	1063585..1064841 (+)	1257	WP_093304228.1	signal recognition particle-docking protein FtsY	Machinery gene
ABL848_RS04960 (ABL848_04955)	-	1065071..1066867 (-)	1797	WP_418116093.1	ATP-binding protein	-
ABL848_RS04965 (ABL848_04960)	-	1066864..1067595 (-)	732	WP_093304232.1	response regulator transcription factor	-
ABL848_RS04970 (ABL848_04965)	-	1067781..1068245 (+)	465	WP_093304234.1	DUF962 domain-containing protein	-
ABL848_RS04975 (ABL848_04970)	rpoH	1068344..1069285 (+)	942	WP_093206681.1	RNA polymerase sigma factor RpoH	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 43338.02 Da
• Isoelectric Point: 5.5535

>NTDB_id=1007668 ABL848_RS04955 WP_093304228.1 1063585..1064841(+) (pilA) [Variovorax sp. NFACC28]
MFSFFKKKPPAETPDAPASTPPAPAAPAPEPAPARSVFSPSSWFGSKPTVEETPAPPPAPALAPVAAPAPAPVPSPAPAP
APAPVASPAPVPVSAPPVAAPVPAPAPVVAPIAEPVIATERKGWFDKLKTGLRKTGTGIQAVFVNAKIDEALYEELESAL
LMADTGVKATEYLLDDLRGRVKRQMATDASQVKALLAETVADLLRPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKLTK
HLADEGASVLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVNAGKARGKDVVLVDTAGRLPTQLHLMDE
LKKIKRVVTKADGTAPHEVLLVIDGNTGQNALAQVKAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEK
LEDLETFNAREFAQALLG

Nucleotide

• Length: 1257 bp

>NTDB_id=1007668 ABL848_RS04955 WP_093304228.1 1063585..1064841(+) (pilA) [Variovorax sp. NFACC28]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAAACCCCCGATGCGCCGGCGTCCACCCCGCCGGCCCCGGCGGCGCC
TGCCCCGGAGCCCGCGCCGGCGCGCTCGGTGTTCTCGCCTTCGAGCTGGTTCGGCTCGAAGCCGACGGTGGAAGAAACGC
CTGCCCCGCCACCCGCACCCGCTCTCGCACCCGTTGCAGCACCGGCACCGGCGCCAGTGCCTTCGCCAGCTCCTGCGCCG
GCCCCCGCACCGGTTGCATCGCCCGCTCCAGTCCCTGTTTCCGCTCCCCCGGTTGCCGCCCCCGTTCCGGCGCCAGCGCC
GGTCGTCGCTCCGATTGCCGAACCCGTCATCGCCACCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGACCGGCCTGCGCA
AGACCGGCACCGGCATCCAGGCCGTGTTCGTCAACGCGAAGATCGACGAGGCACTGTACGAAGAACTCGAATCCGCCCTG
CTGATGGCCGACACCGGCGTGAAGGCGACCGAATACCTGCTCGACGACCTGCGCGGCCGGGTCAAGCGCCAGATGGCCAC
CGACGCCTCGCAAGTCAAGGCCCTGCTGGCCGAGACGGTGGCCGACCTGCTACGCCCGCTCGAGAAGCCGCTGGTCATCG
GCCAGTTCACGCCCACCGTGATCATGGTGGCCGGCGTCAACGGCGCGGGCAAGACCACCTCCATCGGCAAGCTCACCAAG
CACCTGGCCGACGAAGGCGCCTCGGTGCTGCTGGCCGCGGCCGACACCTTCCGCGCGGCGGCGCGCGAGCAGCTGCTGGT
CTGGGCCGACCGCAACACCGTGGAGATCGTGAGCCAGGAAGGCGGCGACCCGTCGGCCGTGAGCTTCGACGCGGTGAACG
CCGGCAAGGCGCGCGGCAAGGACGTGGTGCTGGTCGACACGGCCGGCCGCCTGCCGACGCAGCTGCACCTGATGGACGAG
CTGAAGAAGATCAAGCGCGTCGTCACCAAGGCCGACGGCACCGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACAC
CGGCCAGAACGCCCTGGCGCAGGTCAAGGCCTTCGACGAGACGCTGGGCCTCACGGGCCTGGTCGTGACCAAGCTCGACG
GCACGGCCAAGGGCGGCGTGCTGTGCGCCATCGCGCGGGAAAGGCCGATTCCGGTCTATTTCATCGGCGTGGGCGAAAAG
CTGGAAGACCTGGAAACCTTCAACGCCCGCGAATTCGCGCAGGCACTGCTCGGATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (218-418)

• SRP54-type protein, helical bundle domain (SRP54_N) (136-198)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.821	100	0.495