Detailed information NTG1007664

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: APEC2908_RS21775
• Genome accession: NZ_LR740776
• Coordinates: 4379631..4380656 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain BEN2908 isolate
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4374631..4385656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
APEC2908_RS21745 (APEC2908_4263)	zapB	4374715..4374960 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
APEC2908_RS21750 (APEC2908_4264)	rraA	4375045..4375530 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
APEC2908_RS21755 (APEC2908_4265)	menA	4375623..4376549 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
APEC2908_RS21760 (APEC2908_4266)	hslU	4376616..4377947 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
APEC2908_RS21765 (APEC2908_4267)	hslV	4377957..4378487 (-)	531	WP_000208235.1	ATP-dependent protease subunit HslV	-
APEC2908_RS21770 (APEC2908_4268)	ftsN	4378580..4379539 (-)	960	WP_000068834.1	cell division protein FtsN	-
APEC2908_RS21775 (APEC2908_4269)	cytR	4379631..4380656 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
APEC2908_RS21780 (APEC2908_4270)	priA	4380812..4383010 (-)	2199	WP_001350873.1	primosomal protein N'	Machinery gene
APEC2908_RS21785 (APEC2908_4271)	rpmE	4383213..4383425 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
APEC2908_RS21790 (APEC2908_4272)	yiiX	4383486..4384094 (-)	609	WP_000702319.1	YiiX family permuted papain-like enzyme	-
APEC2908_RS21795 (APEC2908_4273)	metJ	4384154..4384471 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=1007664 APEC2908_RS21775 WP_000644904.1 4379631..4380656(-) (cytR) [Escherichia coli strain BEN2908 isolate]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1007664 APEC2908_RS21775 WP_000644904.1 4379631..4380656(-) (cytR) [Escherichia coli strain BEN2908 isolate]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACTCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCACAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACTATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTACCTACAGTTCATATAGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCTGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGTTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628