Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   APEC2908_RS20570 Genome accession   NZ_LR740776
Coordinates   4147935..4148927 (+) Length   330 a.a.
NCBI ID   WP_000224467.1    Uniprot ID   B7MGH3
Organism   Escherichia coli strain BEN2908 isolate     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4142935..4153927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APEC2908_RS20545 (APEC2908_4037) rbsD 4143059..4143478 (+) 420 WP_001350412.1 D-ribose pyranase -
  APEC2908_RS20550 (APEC2908_4038) rbsA 4143486..4144991 (+) 1506 WP_000387779.1 ribose ABC transporter ATP-binding protein RbsA -
  APEC2908_RS20555 (APEC2908_4039) rbsC 4144996..4145961 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  APEC2908_RS20560 (APEC2908_4040) rbsB 4145986..4146876 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  APEC2908_RS20565 (APEC2908_4041) rbsK 4147002..4147931 (+) 930 WP_001361088.1 ribokinase -
  APEC2908_RS20570 (APEC2908_4042) cytR 4147935..4148927 (+) 993 WP_000224467.1 ribose operon transcriptional repressor RbsR Regulator
  APEC2908_RS20575 (APEC2908_4043) mdtD 4148893..4150320 (-) 1428 WP_001280824.1 multidrug transporter subunit MdtD -
  APEC2908_RS20580 (APEC2908_4044) yieP 4150343..4151035 (-) 693 WP_001131161.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36581.88 Da        Isoelectric Point: 5.2141

>NTDB_id=1007655 APEC2908_RS20570 WP_000224467.1 4147935..4148927(+) (cytR) [Escherichia coli strain BEN2908 isolate]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPALQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1007655 APEC2908_RS20570 WP_000224467.1 4147935..4148927(+) (cytR) [Escherichia coli strain BEN2908 isolate]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGTAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCTGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGGCCCTACAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7MGH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364