Detailed information NTG1007628

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: APEC2908_RS14990
• Genome accession: NZ_LR740776
• Coordinates: 2975828..2976820 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BEN2908 isolate
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2970828..2981820

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
APEC2908_RS14970 (APEC2908_2932)	ygbM	2971459..2972235 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
APEC2908_RS14975 (APEC2908_2933)	ygbN	2972324..2973688 (+)	1365	WP_000104443.1	GntP family transporter	-
APEC2908_RS14980 (APEC2908_2934)	-	2973831..2974874 (-)	1044	WP_161476240.1	MBL fold metallo-hydrolase	-
APEC2908_RS14985 (APEC2908_2936)	-	2975099..2975650 (+)	552	WP_161476241.1	flavodoxin family protein	-
APEC2908_RS14990 (APEC2908_2937)	rpoS	2975828..2976820 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
APEC2908_RS14995 (APEC2908_2938)	nlpD	2976883..2977977 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
APEC2908_RS15000 (APEC2908_2940)	pcm	2978162..2978788 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
APEC2908_RS15005 (APEC2908_2941)	surE	2978782..2979543 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
APEC2908_RS15010 (APEC2908_2942)	truD	2979524..2980573 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
APEC2908_RS15015 (APEC2908_2943)	ispF	2980570..2981049 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
APEC2908_RS15020 (APEC2908_2944)	ispD	2981049..2981759 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1007628 APEC2908_RS14990 WP_000081550.1 2975828..2976820(-) (rpoS) [Escherichia coli strain BEN2908 isolate]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1007628 APEC2908_RS14990 WP_000081550.1 2975828..2976820(-) (rpoS) [Escherichia coli strain BEN2908 isolate]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715