Detailed information NTG1007569

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: APEC5202_RS20725
• Genome accession: NZ_LR740758
• Coordinates: 4253776..4254768 (+)
• Length: 330 a.a.
• NCBI ID: WP_000224467.1
• Uniprot ID: B7MGH3
• Organism: Escherichia coli strain BEN5202 isolate laying hen 51 weeks old
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4248776..4259768

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
APEC5202_RS20700 (APEC5202_4111)	rbsD	4248900..4249319 (+)	420	WP_103529896.1	D-ribose pyranase	-
APEC5202_RS20705 (APEC5202_4112)	rbsA	4249327..4250832 (+)	1506	WP_000387779.1	ribose ABC transporter ATP-binding protein RbsA	-
APEC5202_RS20710 (APEC5202_4113)	rbsC	4250837..4251802 (+)	966	WP_000211858.1	ribose ABC transporter permease	-
APEC5202_RS20715 (APEC5202_4114)	rbsB	4251827..4252717 (+)	891	WP_001056273.1	ribose ABC transporter substrate-binding protein RbsB	-
APEC5202_RS20720 (APEC5202_4115)	rbsK	4252843..4253772 (+)	930	WP_001361088.1	ribokinase	-
APEC5202_RS20725 (APEC5202_4116)	cytR	4253776..4254768 (+)	993	WP_000224467.1	ribose operon transcriptional repressor RbsR	Regulator
APEC5202_RS20730 (APEC5202_4117)	mdtD	4254734..4256161 (-)	1428	WP_001280824.1	multidrug transporter subunit MdtD	-
APEC5202_RS20735 (APEC5202_4118)	yieP	4256184..4256876 (-)	693	WP_001131161.1	FadR/GntR family transcriptional regulator	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 36581.88 Da
• Isoelectric Point: 5.2141

>NTDB_id=1007569 APEC5202_RS20725 WP_000224467.1 4253776..4254768(+) (cytR) [Escherichia coli strain BEN5202 isolate laying hen 51 weeks old]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPALQQQRLQL
TPILMERGSA

Nucleotide

• Length: 993 bp

>NTDB_id=1007569 APEC5202_RS20725 WP_000224467.1 4253776..4254768(+) (cytR) [Escherichia coli strain BEN5202 isolate laying hen 51 weeks old]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGTAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCTGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGGCCCTACAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (169-329)

3D structure

• AlphaFold DB: B7MGH3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	37.048	100	0.373
cytR	Vibrio cholerae C6706	39.088	93.03	0.364