Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABFG95_RS15560 Genome accession   NZ_CP157584
Coordinates   3360030..3361475 (+) Length   481 a.a.
NCBI ID   WP_049070495.1    Uniprot ID   A0AAU7L3M2
Organism   Achromobacter sp. HNDS-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3355030..3366475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFG95_RS15545 (ABFG95_15545) leuA 3355998..3357707 (-) 1710 WP_348994745.1 2-isopropylmalate synthase -
  ABFG95_RS15550 (ABFG95_15550) - 3358234..3359211 (-) 978 WP_100503075.1 tripartite tricarboxylate transporter substrate binding protein -
  ABFG95_RS15555 (ABFG95_15555) - 3359408..3360031 (-) 624 WP_059268861.1 hypothetical protein -
  ABFG95_RS15560 (ABFG95_15560) rpoN/rpoN1 3360030..3361475 (+) 1446 WP_049070495.1 RNA polymerase factor sigma-54 Machinery gene
  ABFG95_RS15565 (ABFG95_15565) - 3361578..3361877 (+) 300 WP_100503077.1 (2Fe-2S)-binding protein -
  ABFG95_RS15570 (ABFG95_15570) - 3361847..3362767 (-) 921 WP_063569657.1 LysR substrate-binding domain-containing protein -
  ABFG95_RS15575 (ABFG95_15575) - 3362932..3363795 (+) 864 WP_278990339.1 DMT family transporter -
  ABFG95_RS15580 (ABFG95_15580) bfr 3364219..3364695 (+) 477 WP_006386993.1 bacterioferritin -
  ABFG95_RS15585 (ABFG95_15585) - 3364780..3365478 (-) 699 WP_100508066.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52578.93 Da        Isoelectric Point: 4.8062

>NTDB_id=1007542 ABFG95_RS15560 WP_049070495.1 3360030..3361475(+) (rpoN/rpoN1) [Achromobacter sp. HNDS-1]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLELEAEISQVLADNPLLERDDEPSSVETQAESERESSVQDDEP
APERDTPVEEMPGSGGVYPDDDSSMPEAARPDTLREHLLGQLVLTRAAPRDAALTALLIDELDENGYLGSPLEEILGWLP
AEMEPDLDELRAALSLLQSFDPPGIGARDMADCLLLQLRNPDPARLPEAADPKVLACARQVCAQHLALLATGNTAKLCAA
TGCDEATLRAAHSLILRLEPRPGRAWTVPAADYAVPDVIVRKTRRGWQVTLNSAAVPRLQINGLYAQMLGNQKESAHAGL
QSQLQQAKWMIRNVEQRFDTILRVAQAIVDRQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGTGVSTDGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMEKLADQGIVIARRTVAKYREALRIAPAALRKAQAAA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=1007542 ABFG95_RS15560 WP_049070495.1 3360030..3361475(+) (rpoN/rpoN1) [Achromobacter sp. HNDS-1]
ATGCAAAATATTGTACCTATGACCCGTCCTATTTTAGAACTGCGGCCCGGTCAGCATCTGACGCTGACCCCTCAACTGCA
GCAATCCATCCGGTTGCTGCAGCTGTCCACGCTCGAGCTCGAGGCGGAAATCTCGCAAGTGCTCGCGGACAATCCGTTGC
TGGAACGCGACGATGAACCCTCCTCGGTCGAGACCCAGGCCGAATCCGAGCGTGAATCATCGGTGCAGGACGACGAACCC
GCGCCCGAACGCGACACGCCGGTGGAGGAGATGCCGGGGTCGGGCGGCGTCTATCCCGATGACGATTCCAGCATGCCCGA
GGCGGCCCGGCCCGATACCCTGCGCGAACACCTGCTGGGCCAGCTGGTGCTGACGCGCGCGGCGCCGCGCGATGCCGCGC
TGACCGCGCTGCTGATCGACGAATTGGACGAGAACGGCTATCTGGGCTCGCCGCTGGAGGAAATCCTGGGCTGGCTGCCG
GCCGAGATGGAGCCGGACCTGGATGAGCTGCGCGCGGCCTTGTCGCTGTTGCAGTCGTTCGACCCGCCGGGCATCGGCGC
GCGCGACATGGCCGATTGCCTGCTGTTGCAACTGCGCAACCCCGACCCGGCGCGACTGCCGGAGGCCGCCGACCCGAAGG
TGCTGGCCTGTGCTCGTCAGGTCTGCGCCCAGCATCTTGCGCTGCTGGCCACGGGCAACACCGCCAAGCTGTGCGCGGCC
ACGGGTTGTGACGAGGCGACGCTGCGCGCCGCCCATTCCCTGATCCTGCGCCTGGAGCCGCGTCCGGGCCGCGCCTGGAC
GGTGCCGGCGGCGGACTACGCCGTGCCCGACGTCATCGTGCGCAAGACGCGCCGCGGTTGGCAGGTGACGCTCAACAGCG
CGGCCGTGCCGCGGCTGCAGATCAACGGGCTGTACGCGCAGATGCTGGGCAACCAGAAGGAGTCCGCCCACGCCGGCCTG
CAGTCGCAGTTGCAGCAGGCCAAGTGGATGATCCGCAACGTCGAGCAGCGCTTCGACACCATCCTGCGCGTGGCCCAGGC
CATCGTCGATCGCCAGACCGCCTTCTTCAGCCAGGGGCCGGCGGCCATGCGGCCGCTCATCCTGAAGGACATCGCGGGCG
AACTGGGCCTGCACGAGTCCACGATTTCACGCGCCACGACACAGAAGTACATGCTCACTCCGTTTGGCACGTTGGAACTC
AAGCGCTTCTTCGGGACAGGGGTGTCGACCGATGGCGGCGACGCCACCTCGGCCACGGCGGTGCAGACCTTCATCCGCCA
GATGGTGGCCGAGGAGAACCGCGCCAAGCCACTGTCGGACAGCCAGATCATGGAAAAACTGGCCGACCAGGGCATCGTCA
TCGCCCGCCGCACCGTGGCCAAATACCGCGAGGCGCTGCGGATTGCGCCAGCGGCATTGCGCAAGGCGCAGGCTGCCGCG
CGATGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(107-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.713

100

0.511

Multiple sequence alignment