Detailed information NTG1007540

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: APEC5202_RS14635
• Genome accession: NZ_LR740758
• Coordinates: 2968730..2969722 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BEN5202 isolate laying hen 51 weeks old
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2963730..2974722

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
APEC5202_RS14615 (APEC5202_2882)	ygbM	2964361..2965137 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
APEC5202_RS14620 (APEC5202_2883)	ygbN	2965226..2966590 (+)	1365	WP_000104443.1	GntP family transporter	-
APEC5202_RS14625 (APEC5202_2884)	-	2966733..2967776 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
APEC5202_RS14630 (APEC5202_2886)	-	2968001..2968552 (+)	552	WP_001179442.1	flavodoxin family protein	-
APEC5202_RS14635 (APEC5202_2887)	rpoS	2968730..2969722 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
APEC5202_RS14640 (APEC5202_2888)	nlpD	2969785..2970879 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
APEC5202_RS14645 (APEC5202_2890)	pcm	2971064..2971690 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
APEC5202_RS14650 (APEC5202_2891)	surE	2971684..2972445 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
APEC5202_RS14655 (APEC5202_2892)	truD	2972426..2973475 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
APEC5202_RS14660 (APEC5202_2893)	ispF	2973472..2973951 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
APEC5202_RS14665 (APEC5202_2894)	ispD	2973951..2974661 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1007540 APEC5202_RS14635 WP_000081550.1 2968730..2969722(-) (rpoS) [Escherichia coli strain BEN5202 isolate laying hen 51 weeks old]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1007540 APEC5202_RS14635 WP_000081550.1 2968730..2969722(-) (rpoS) [Escherichia coli strain BEN5202 isolate laying hen 51 weeks old]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715