Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABKJ27_RS09335 Genome accession   NZ_CP157578
Coordinates   1928679..1930040 (-) Length   453 a.a.
NCBI ID   WP_077804517.1    Uniprot ID   A0A2N6PNQ5
Organism   Streptococcus sp. KHUD_011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1923679..1935040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS09310 (ABKJ27_09320) - 1924641..1924993 (-) 353 Protein_1787 hypothetical protein -
  ABKJ27_RS09315 (ABKJ27_09325) - 1925008..1925931 (-) 924 WP_410011763.1 Rpn family recombination-promoting nuclease/putative transposase -
  ABKJ27_RS09320 (ABKJ27_09330) - 1926155..1927123 (-) 969 WP_033682853.1 ribose-phosphate diphosphokinase -
  ABKJ27_RS09325 (ABKJ27_09335) - 1927269..1928084 (-) 816 WP_261146149.1 PrsW family intramembrane metalloprotease -
  ABKJ27_RS09330 (ABKJ27_09340) - 1928109..1928606 (-) 498 WP_004237611.1 beta-class carbonic anhydrase -
  ABKJ27_RS09335 (ABKJ27_09345) radA 1928679..1930040 (-) 1362 WP_077804517.1 DNA repair protein RadA Machinery gene
  ABKJ27_RS09340 (ABKJ27_09350) - 1930054..1930611 (-) 558 WP_386686875.1 histidine phosphatase family protein -
  ABKJ27_RS09345 (ABKJ27_09355) - 1930571..1931014 (-) 444 WP_265471999.1 dUTP diphosphatase -
  ABKJ27_RS09355 (ABKJ27_09365) tadA 1931201..1931668 (-) 468 WP_001110112.1 tRNA adenosine(34) deaminase TadA -
  ABKJ27_RS09360 (ABKJ27_09370) - 1931868..1933154 (-) 1287 WP_001832534.1 adenylosuccinate synthase -
  ABKJ27_RS09365 (ABKJ27_09375) comW 1933385..1933621 (-) 237 WP_000940045.1 sigma(X)-activator ComW Regulator

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49416.91 Da        Isoelectric Point: 6.5137

>NTDB_id=1007497 ABKJ27_RS09335 WP_077804517.1 1928679..1930040(-) (radA) [Streptococcus sp. KHUD_011]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIQVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1007497 ABKJ27_RS09335 WP_077804517.1 1928679..1930040(-) (radA) [Streptococcus sp. KHUD_011]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGTTGCCCCAACTG
TGGGTCTTGGTCTTCTTTTGTAGAAGAGGTTGAGGTTGCCGAGGTAAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTGGCTGAGGTGACTTCAATCAACGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTA
CTTGGAGGAGGAGTGGTACCAGGAAGTCTCGTCCTCATCGGTGGGGATCCTGGGATTGGGAAATCTACCCTTCTCCTACA
AGTCTCAACCCAGCTGTCTCAAGTGGGGACTGTTCTCTACGTTAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTACGTG
CAGAGCGCTTGGGTGATATCGATAGTGAGTTTTATCTTTATGCAGAGACAAATATGCAGAGTGTTCGCGCAGAGGTAGAG
AGAATCCAGCCAGACTTCCTTATTATTGACTCTATCCAGACTATTATGTCTCCTGAGATTTCAGGGGTTCAGGGGTCTGT
TTCTCAGGTGCGTGAGGTGACAGCTGAACTGATGCAGCTGGCTAAAACTAATAATATCGCCATCTTTATCGTAGGCCATG
TTACCAAGGAAGGAACCTTGGCTGGGCCTCGTATGCTAGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGT
CATCATACCTTCCGTATTTTGAGAGCGGTCAAAAACCGTTTTGGCTCTACCAATGAAATTGGGATTTTTGAGATGCAGTC
AGGTGGCTTGGTTGAGGTCCTCAATCCGAGTCAAGTTTTCTTAGAAGAGCGTTTAGACGGTGCTACGGGCTCGTCCATCG
TGGTGACTATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTGACACCGACCATGTTTGGAAATGCCAAG
CGTACGACAACAGGACTTGATTTTAACCGTGCTAGCTTGATTATGGCTGTTTTGGAAAAGCGGGCAGGGCTTCTCTTGCA
AAATCAAGATGCTTATCTTAAATCTGCTGGCGGTGTCAAATTGGATGAACCTGCCATTGACTTGGCGGTTGCAGTTGCCA
TTGCTTCTAGTTACAAAGACAAGCCAACCAACCCTCAGGAATGTTTTGTAGGCGAGCTGGGTTTGACAGGGGAGATTCGG
CGCGTGAATCGTATCGAGCAACGTATCAATGAAGCTGCTAAACTGGGCTTTACTAAGATTTATGTACCTAAGAATTCCTT
AACAGGAATCACTCCACCCAAGGAAATTCAGGTCATTGGAGTGACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N6PNQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

99.779

100

0.998
  radA Streptococcus mitis SK321

99.779

100

0.998
  radA Streptococcus pneumoniae Rx1

99.779

100

0.998
  radA Streptococcus pneumoniae D39

99.779

100

0.998
  radA Streptococcus pneumoniae R6

99.779

100

0.998
  radA Streptococcus pneumoniae TIGR4

99.779

100

0.998
  radA Bacillus subtilis subsp. subtilis str. 168

63.135

100

0.631

Multiple sequence alignment