Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABKJ27_RS05275 Genome accession   NZ_CP157578
Coordinates   1153869..1155671 (-) Length   600 a.a.
NCBI ID   WP_410011468.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1148869..1160671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS05260 (ABKJ27_05275) ftsW 1150764..1151987 (-) 1224 WP_033681863.1 cell division peptidoglycan polymerase FtsW -
  ABKJ27_RS05265 (ABKJ27_05280) prsA 1152149..1153087 (-) 939 WP_410011467.1 peptidylprolyl isomerase PrsA -
  ABKJ27_RS05270 (ABKJ27_05285) - 1153154..1153867 (-) 714 WP_080702856.1 O-methyltransferase -
  ABKJ27_RS05275 (ABKJ27_05290) pepF 1153869..1155671 (-) 1803 WP_410011468.1 oligoendopeptidase F Regulator
  ABKJ27_RS05280 (ABKJ27_05295) coiA 1155690..1156643 (-) 954 WP_410011469.1 competence protein CoiA Machinery gene
  ABKJ27_RS05285 (ABKJ27_05300) tehB 1156822..1157682 (-) 861 WP_410011470.1 SAM-dependent methyltransferase TehB -
  ABKJ27_RS05290 (ABKJ27_05305) smpB 1157698..1158165 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  ABKJ27_RS05295 (ABKJ27_05310) rnr 1158128..1160482 (-) 2355 WP_410011471.1 ribonuclease R -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69918.82 Da        Isoelectric Point: 4.5329

>NTDB_id=1007459 ABKJ27_RS05275 WP_410011468.1 1153869..1155671(-) (pepF) [Streptococcus sp. KHUD_011]
MVLQRHEINEKDTWDLSTIYPTDQAWEKALKDLTEQLETVAQYEGHLLDSEDSLLEITEFSLEMERQMEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLDQAFSFYEPEFMEISEEQYADFLEAQPKLQVYQHYFDKLLQGKEHVLSQREEELLAGA
GEIFGSASETFAILDNADIVFPYVLDDDGKEVQLSHGTYTRLMESKNREVRRGAYQALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVEYSFTYPEALK
KAEEALAVLGEDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPEIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1007459 ABKJ27_RS05275 WP_410011468.1 1153869..1155671(-) (pepF) [Streptococcus sp. KHUD_011]
ATGGTATTACAAAGACATGAAATAAATGAAAAAGATACATGGGATCTATCAACGATCTACCCAACTGACCAGGCTTGGGA
AAAAGCCTTAAAAGATTTAACAGAACAATTGGAGACAGTAGCCCAGTATGAAGGCCATCTCCTGGATAGTGAGGATAGCC
TACTCGAAATCACTGAATTTTCTCTTGAAATGGAACGCCAGATGGAGAAGCTTTACGTCTATGCTCATATGAAGAATGAT
CAGGATACTCGTGAAGCCAAGTACCAAGAGTACTATGCCAAGGCAATGACTCTCTACAGCCAGCTAGACCAAGCCTTTTC
ATTCTATGAGCCTGAATTTATGGAGATTAGTGAAGAGCAGTATGCTGACTTTTTAGAGGCTCAACCAAAATTGCAGGTTT
ATCAACACTATTTTGATAAGCTTTTACAAGGCAAGGAACACGTTCTATCACAACGTGAAGAAGAATTATTGGCTGGAGCT
GGAGAAATCTTTGGTTCGGCAAGTGAAACCTTCGCTATCTTGGACAATGCGGATATTGTATTCCCTTATGTCCTTGACGA
TGATGGTAAGGAAGTTCAGCTATCTCATGGGACTTACACACGTTTGATGGAGTCTAAAAATCGTGAGGTGCGTCGTGGTG
CCTATCAAGCACTTTATGCGACTTATGAACAATTCCAACATACCTATGCCAAAACCTTGCAAACCAATGTTAAGGTGCAA
AACTACCGTGCCAAAGTTCGCAACTACAAGAGTGCGCGTCATGCAGCCCTCGCTGCGAATTTTGTTCCAGAAAGTGTTTA
TGACAATTTGGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTACATCGTTACCTGGAGTTGCGTTCAAAGATTTTGGGGA
TTTCAGACCTCAAGATGTACGATGTCTACACACCGCTTTCATCTGTTGAATATAGTTTTACCTACCCAGAAGCCTTGAAA
AAAGCAGAAGAAGCCTTGGCAGTCTTGGGTGAGGATTACTTGAGCCGTGTTAAACGTGCCTTCAGCGAGCGTTGGATTGA
TGTTTACGAAAACCAAGGCAAGCGTTCAGGTGCTTACTCTGGTGGTTCTTACGATACCAATGCCTTTATGCTACTTAACT
GGCAGGACAATTTAGACAATCTCTTTACCCTTGTTCATGAAACAGGTCACAGTATGCATTCAAGCTATACTCGTGAAACG
CAGCCTTATGTTTACGGAGATTATTCTATCTTCTTGGCTGAGATTGCCTCAACGACCAATGAAAATATCTTGACGGAGAA
ATTATTGGAAGAAGTGGAAGATGATGCAACTCGCTTTGCTATTCTCAATAACTTCCTAGATGGTTTCCGTGGAACAGTTT
TCCGCCAAACTCAATTTGCCGAGTTTGAACACGCGATTCACCAAGCGGATCAAAATGGTGAAGTCTTGACAAGCGATTTC
TTAAATAAACTCTACGCAGACTTGAACCAAGAGTATTATGGTTTGAGTAAGGAAGATAATCCTGAAATCCAATACGAGTG
GGCACGTATTCCACACTTCTACTATAACTACTATGTATACCAATATTCAACAGGTTTTGCAGCAGCCTCAGCCCTGGCTG
AAAAGATTGTTCATGGTAGTCAAGAAGACCGTGACCGTTATATCGACTACCTCAAGGCAGGTAAATCTGACTATCCACTT
AATGTCATGAGAAAAGCTGGTGTTGATATGGAGAAGGAAGACTATCTCAACGATGCCTTTGCAGTCTTTGAACGTCGTTT
AAATGAGTTTGAAGCACTTGTTGAAAAATTGGGATTGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

66.946

99.333

0.665

Multiple sequence alignment