Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ABKJ27_RS02250 Genome accession   NZ_CP157578
Coordinates   460867..461163 (+) Length   98 a.a.
NCBI ID   WP_410011950.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 455867..466163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS02220 (ABKJ27_02230) - 456049..457272 (+) 1224 WP_410011947.1 restriction endonuclease subunit S -
  ABKJ27_RS02225 (ABKJ27_02235) - 457283..457861 (+) 579 WP_410011948.1 hypothetical protein -
  ABKJ27_RS02230 (ABKJ27_02240) - 457909..459510 (+) 1602 WP_410011949.1 type I restriction-modification system subunit M -
  ABKJ27_RS02235 (ABKJ27_02245) - 459603..460007 (+) 405 WP_261082151.1 YbgA family protein -
  ABKJ27_RS02240 (ABKJ27_02250) - 459991..460356 (+) 366 WP_261082149.1 TIGR02328 family protein -
  ABKJ27_RS02245 (ABKJ27_02255) - 460512..460877 (+) 366 WP_238095769.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ABKJ27_RS02250 (ABKJ27_02260) HI0659 460867..461163 (+) 297 WP_410011950.1 helix-turn-helix domain-containing protein Machinery gene
  ABKJ27_RS02255 (ABKJ27_02265) metE 461685..463934 (+) 2250 WP_084948050.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  ABKJ27_RS02260 (ABKJ27_02270) metF 464037..464903 (+) 867 WP_084948120.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10836.54 Da        Isoelectric Point: 7.0172

>NTDB_id=1007446 ABKJ27_RS02250 WP_410011950.1 460867..461163(+) (HI0659) [Streptococcus sp. KHUD_011]
MKNSAIGSNWKDVRSELFTKEEILESDMRVAIMSELIEARHEQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAIVPLEQRKSG

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1007446 ABKJ27_RS02250 WP_410011950.1 460867..461163(+) (HI0659) [Streptococcus sp. KHUD_011]
ATGAAGAATAGTGCTATTGGAAGTAACTGGAAGGATGTCCGGTCAGAACTCTTTACCAAGGAGGAAATCCTTGAAAGTGA
TATGCGAGTGGCTATCATGAGTGAGTTGATTGAAGCCAGACATGAGCAAGGAATCAGCCAGAAAAAGCTAGAAGAACTCA
GTGGAGTGAGTCAACCTGTCATAGCTAGGATGGAAACAGGAAAGACTAGCCCCCAGTTGGATACAGTCTTGAAAGTTTTA
GCCAGTTTAGGAAAGACACTAGCAATCGTCCCCCTCGAACAGAGAAAGAGTGGATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

92.857

0.561

Multiple sequence alignment